14 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	traf6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (569 aa)
	ikbkb	Inhibitor of nuclear factor kappa B kinase subunit beta. (801 aa)
	LOC101170271	Nerve growth factor receptor a (TNFR superfamily, member 16). (389 aa)
	LOC101164147	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family. (198 aa)
	LOC101157368	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family. (291 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	H2M970_ORYLA	Ubiquitin-like domain-containing protein. (129 aa)
	ubc	Ubiquitin B. (782 aa)
	LOC101162015	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (303 aa)
	nfkbia	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b. (316 aa)
	sqstm1	Sequestosome 1. (436 aa)
	rps27a	Ribosomal protein S27a. (195 aa)
	LOC101166088	Nerve growth factor receptor b. (434 aa)
	LOC101166698	Protein kinase domain-containing protein. (721 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2M970_ORYLA	LOC101162015	ENSORLP00000015051	ENSORLP00000019864	Ubiquitin-like domain-containing protein.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	0.775
H2M970_ORYLA	LOC101166698	ENSORLP00000015051	ENSORLP00000040412	Ubiquitin-like domain-containing protein.	Protein kinase domain-containing protein.	0.583
H2M970_ORYLA	ikbkb	ENSORLP00000015051	ENSORLP00000003065	Ubiquitin-like domain-containing protein.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.614
H2M970_ORYLA	nfkbia	ENSORLP00000015051	ENSORLP00000022136	Ubiquitin-like domain-containing protein.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.775
H2M970_ORYLA	rps27a	ENSORLP00000015051	ENSORLP00000038189	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.992
H2M970_ORYLA	sqstm1	ENSORLP00000015051	ENSORLP00000025483	Ubiquitin-like domain-containing protein.	Sequestosome 1.	0.719
H2M970_ORYLA	traf6	ENSORLP00000015051	ENSORLP00000001290	Ubiquitin-like domain-containing protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.926
H2M970_ORYLA	uba52	ENSORLP00000015051	ENSORLP00000010731	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.552
H2M970_ORYLA	ubc	ENSORLP00000015051	ENSORLP00000015065	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.960
LOC101157368	LOC101164147	ENSORLP00000010673	ENSORLP00000008065	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Nerve growth factor b (beta polypeptide); Belongs to the NGF-beta family.	0.902
LOC101157368	LOC101166088	ENSORLP00000010673	ENSORLP00000038605	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Nerve growth factor receptor b.	0.970
LOC101157368	LOC101166698	ENSORLP00000010673	ENSORLP00000040412	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Protein kinase domain-containing protein.	0.439
LOC101157368	LOC101170271	ENSORLP00000010673	ENSORLP00000003150	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.965
LOC101157368	traf6	ENSORLP00000010673	ENSORLP00000001290	Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.431
LOC101162015	H2M970_ORYLA	ENSORLP00000019864	ENSORLP00000015051	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Ubiquitin-like domain-containing protein.	0.775
LOC101162015	LOC101166698	ENSORLP00000019864	ENSORLP00000040412	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Protein kinase domain-containing protein.	0.563
LOC101162015	LOC101170271	ENSORLP00000019864	ENSORLP00000003150	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Nerve growth factor receptor a (TNFR superfamily, member 16).	0.407
LOC101162015	ikbkb	ENSORLP00000019864	ENSORLP00000003065	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.988
LOC101162015	nfkbia	ENSORLP00000019864	ENSORLP00000022136	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.	0.904
LOC101162015	rps27a	ENSORLP00000019864	ENSORLP00000038189	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.	Ribosomal protein S27a.	0.930