STRINGSTRING
stub1 stub1 LOC101157631 LOC101157631 LOC101169523 LOC101169523 bambi bambi smad3 smad3 uba52 uba52 strap strap smad2 smad2 H2M970_ORYLA H2M970_ORYLA ubc ubc LOC101172809 LOC101172809 LOC101159109 LOC101159109 ldlrad4 ldlrad4 rps27a rps27a LOC101174785 LOC101174785 TGFBR2 TGFBR2 smad7 smad7
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
stub1STIP1 homology and U-Box containing protein 1. (284 aa)
LOC101157631Transforming growth factor beta; Belongs to the TGF-beta family. (444 aa)
LOC101169523Mothers against decapentaplegic homolog. (425 aa)
bambiBMP and activin membrane-bound inhibitor homolog; Negatively regulates TGF-beta signaling. Belongs to the BAMBI family. (257 aa)
smad3Mothers against decapentaplegic homolog. (425 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
strapSerine/threonine kinase receptor associated protein. (329 aa)
smad2Mothers against decapentaplegic homolog. (473 aa)
H2M970_ORYLAUbiquitin-like domain-containing protein. (129 aa)
ubcUbiquitin B. (782 aa)
LOC101172809Prostate transmembrane protein, androgen induced 1. (324 aa)
LOC101159109Mothers against decapentaplegic homolog. (467 aa)
ldlrad4Low density lipoprotein receptor class A domain containing 4b. (292 aa)
rps27aRibosomal protein S27a. (195 aa)
LOC101174785TGF-beta receptor type-2; Transmembrane serine/threonine kinase forming with the TGF- beta type I serine/threonine kinase receptor, TGFBR1, the non- promiscuous receptor for the TGF-beta cytokines TGFB1, TGFB2 and TGFB3. Transduces the TGFB1, TGFB2 and TGFB3 signal from the cell surface to the cytoplasm and is thus regulating a plethora of physiological and pathological processes including cell cycle arrest in epithelial and hematopoietic cells, control of mesenchymal cell proliferation and differentiation, wound healing, extracellular matrix production, immunosuppression and carcinoge [...] (587 aa)
TGFBR2Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily. (540 aa)
smad7Mothers against decapentaplegic homolog. (375 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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