64 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101164062	JunB proto-oncogene, AP-1 transcription factor subunit b. (327 aa)
	men1	Multiple endocrine neoplasia I. (691 aa)
	smad2	Mothers against decapentaplegic homolog. (473 aa)
	ncor1	Nuclear receptor corepressor 1. (2380 aa)
	LOC101159747	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (389 aa)
	H2M970_ORYLA	Ubiquitin-like domain-containing protein. (129 aa)
	ubc	Ubiquitin B. (782 aa)
	tfdp1	Transcription factor. (413 aa)
	meis2	Meis homeobox 2a. (478 aa)
	parp1	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1015 aa)
	irx6	Iroquois homeobox 6a. (489 aa)
	irx3	Iroquois homeobox 3a. (423 aa)
	ncor2	Nuclear receptor corepressor 2. (2180 aa)
	LOC101157469	Iroquois homeobox 4b. (390 aa)
	LOC101155782	Iroquois homeobox 1b. (452 aa)
	LOC101169770	JunB proto-oncogene, AP-1 transcription factor subunit a. (336 aa)
	cdk19	Cyclin-dependent kinase 19; Belongs to the protein kinase superfamily. (484 aa)
	LOC101159109	Mothers against decapentaplegic homolog. (467 aa)
	e2f4	E2F transcription factor 4. (390 aa)
	ccnt1	Cyclin T1; Belongs to the cyclin family. (251 aa)
	LOC101164754	E2F transcription factor 5. (354 aa)
	cdk9	Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily. (393 aa)
	rbl1	Retinoblastoma-like 1 (p107). (1112 aa)
	mkx	Mohawk homeobox a. (399 aa)
	LOC101173585	TGFB-induced factor homeobox 1. (302 aa)
	ccnk	Cyclin K; Belongs to the cyclin family. (534 aa)
	LOC101163504	Mothers against decapentaplegic homolog. (528 aa)
	ccnq	Cyclin Q; Belongs to the cyclin family. (257 aa)
	smad7	Mothers against decapentaplegic homolog. (375 aa)
	LOC101169695	Homeobox domain-containing protein. (388 aa)
	ccnt2	Cyclin T2; Belongs to the cyclin family. (755 aa)
	LOC101171546	Meis homeobox 2b. (378 aa)
	skil	SKI-like proto-oncogene a. (746 aa)
	LOC101162905	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (369 aa)
	LOC101160967	Iroquois homeobox 7. (312 aa)
	rps27a	Ribosomal protein S27a. (195 aa)
	rnf111	Ring finger protein 111. (1017 aa)
	irx5	Iroquois homeobox 5a. (448 aa)
	snw1	SNW domain containing 1. (578 aa)
	sp1	Sp1 transcription factor. (467 aa)
	ski	V-ski avian sarcoma viral oncogene homolog a. (739 aa)
	ccnc	Cyclin C; Belongs to the cyclin family. (283 aa)
	irx2	Iroquois homeobox 2a. (502 aa)
	LOC101173916	Mothers against decapentaplegic homolog. (538 aa)
	LOC101174179	Homeobox domain-containing protein. (532 aa)
	furin	Furin (paired basic amino acid cleaving enzyme) b; Belongs to the peptidase S8 family. (835 aa)
	trim33	Tripartite motif containing 33. (1180 aa)
	atp1b4	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family. (342 aa)
	LOC101169523	Mothers against decapentaplegic homolog. (425 aa)
	meis1	Meis homeobox 1 b. (388 aa)
	LOC101171238	V-ski avian sarcoma viral oncogene homolog b. (685 aa)
	LOC101157196	Cyclin T2b; Belongs to the cyclin family. (562 aa)
	SMAD4	Mothers against decapentaplegic homolog. (510 aa)
	LOC101159378	Iroquois homeobox 4a. (470 aa)
	LOC101162949	Iroquois homeobox 1a. (500 aa)
	nedd4l	NEDD4 like E3 ubiquitin protein ligase. (1207 aa)
	smad3	Mothers against decapentaplegic homolog. (425 aa)
	LOC101154966	Myeloid ecotropic viral integration site 3. (448 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	cdk8	Cyclin-dependent kinase 8; Belongs to the protein kinase superfamily. (463 aa)
	LOC100049240	Furin (paired basic amino acid cleaving enzyme) a; Belongs to the peptidase S8 family. (814 aa)
	LOC101168740	Mohawk homeobox b. (385 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	usp9x	Ubiquitin specific peptidase 9; Belongs to the peptidase C19 family. (2504 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2M970_ORYLA	ncor1	ENSORLP00000015051	ENSORLP00000015017	Ubiquitin-like domain-containing protein.	Nuclear receptor corepressor 1.	0.527
H2M970_ORYLA	ncor2	ENSORLP00000015051	ENSORLP00000017559	Ubiquitin-like domain-containing protein.	Nuclear receptor corepressor 2.	0.527
H2M970_ORYLA	nedd4l	ENSORLP00000015051	ENSORLP00000007519	Ubiquitin-like domain-containing protein.	NEDD4 like E3 ubiquitin protein ligase.	0.666
H2M970_ORYLA	rnf111	ENSORLP00000015051	ENSORLP00000038000	Ubiquitin-like domain-containing protein.	Ring finger protein 111.	0.719
H2M970_ORYLA	rps27a	ENSORLP00000015051	ENSORLP00000038189	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.992
H2M970_ORYLA	uba52	ENSORLP00000015051	ENSORLP00000010731	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.552
H2M970_ORYLA	ubc	ENSORLP00000015051	ENSORLP00000015065	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.960
H2M970_ORYLA	usp9x	ENSORLP00000015051	ENSORLP00000013500	Ubiquitin-like domain-containing protein.	Ubiquitin specific peptidase 9; Belongs to the peptidase C19 family.	0.521
LOC101154966	LOC101163504	ENSORLP00000010718	ENSORLP00000045202	Myeloid ecotropic viral integration site 3.	Mothers against decapentaplegic homolog.	0.419
LOC101154966	LOC101173916	ENSORLP00000010718	ENSORLP00000029700	Myeloid ecotropic viral integration site 3.	Mothers against decapentaplegic homolog.	0.419
LOC101154966	SMAD4	ENSORLP00000010718	ENSORLP00000006328	Myeloid ecotropic viral integration site 3.	Mothers against decapentaplegic homolog.	0.419
LOC101157196	ccnc	ENSORLP00000005423	ENSORLP00000033442	Cyclin T2b; Belongs to the cyclin family.	Cyclin C; Belongs to the cyclin family.	0.652
LOC101157196	ccnk	ENSORLP00000005423	ENSORLP00000026551	Cyclin T2b; Belongs to the cyclin family.	Cyclin K; Belongs to the cyclin family.	0.835
LOC101157196	ccnt1	ENSORLP00000005423	ENSORLP00000020652	Cyclin T2b; Belongs to the cyclin family.	Cyclin T1; Belongs to the cyclin family.	0.568
LOC101157196	ccnt2	ENSORLP00000005423	ENSORLP00000043132	Cyclin T2b; Belongs to the cyclin family.	Cyclin T2; Belongs to the cyclin family.	0.554
LOC101157196	cdk19	ENSORLP00000005423	ENSORLP00000019102	Cyclin T2b; Belongs to the cyclin family.	Cyclin-dependent kinase 19; Belongs to the protein kinase superfamily.	0.560
LOC101157196	cdk8	ENSORLP00000005423	ENSORLP00000011144	Cyclin T2b; Belongs to the cyclin family.	Cyclin-dependent kinase 8; Belongs to the protein kinase superfamily.	0.560
LOC101157196	cdk9	ENSORLP00000005423	ENSORLP00000022884	Cyclin T2b; Belongs to the cyclin family.	Cyclin-dependent kinase 9 (CDC2-related kinase); Belongs to the protein kinase superfamily.	0.954
LOC101157196	sp1	ENSORLP00000005423	ENSORLP00000034132	Cyclin T2b; Belongs to the cyclin family.	Sp1 transcription factor.	0.532
LOC101159109	LOC101159747	ENSORLP00000019646	ENSORLP00000015020	Mothers against decapentaplegic homolog.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.943