26 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ski	V-ski avian sarcoma viral oncogene homolog a. (739 aa)
	trim33	Tripartite motif containing 33. (1180 aa)
	atp1b4	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family. (342 aa)
	LOC101169523	Mothers against decapentaplegic homolog. (425 aa)
	LOC101171238	V-ski avian sarcoma viral oncogene homolog b. (685 aa)
	SMAD4	Mothers against decapentaplegic homolog. (510 aa)
	nedd4l	NEDD4 like E3 ubiquitin protein ligase. (1207 aa)
	smad3	Mothers against decapentaplegic homolog. (425 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	usp9x	Ubiquitin specific peptidase 9; Belongs to the peptidase C19 family. (2504 aa)
	smad2	Mothers against decapentaplegic homolog. (473 aa)
	ncor1	Nuclear receptor corepressor 1. (2380 aa)
	LOC101159747	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (389 aa)
	H2M970_ORYLA	Ubiquitin-like domain-containing protein. (129 aa)
	ubc	Ubiquitin B. (782 aa)
	parp1	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1015 aa)
	ncor2	Nuclear receptor corepressor 2. (2180 aa)
	LOC101159109	Mothers against decapentaplegic homolog. (467 aa)
	LOC101173585	TGFB-induced factor homeobox 1. (302 aa)
	LOC101174179	Homeobox domain-containing protein. (532 aa)
	LOC101173916	Mothers against decapentaplegic homolog. (538 aa)
	snw1	SNW domain containing 1. (578 aa)
	rps27a	Ribosomal protein S27a. (195 aa)
	LOC101162905	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (369 aa)
	skil	SKI-like proto-oncogene a. (746 aa)
	LOC101163504	Mothers against decapentaplegic homolog. (528 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2M970_ORYLA	ncor1	ENSORLP00000015051	ENSORLP00000015017	Ubiquitin-like domain-containing protein.	Nuclear receptor corepressor 1.	0.527
H2M970_ORYLA	ncor2	ENSORLP00000015051	ENSORLP00000017559	Ubiquitin-like domain-containing protein.	Nuclear receptor corepressor 2.	0.527
H2M970_ORYLA	nedd4l	ENSORLP00000015051	ENSORLP00000007519	Ubiquitin-like domain-containing protein.	NEDD4 like E3 ubiquitin protein ligase.	0.666
H2M970_ORYLA	rps27a	ENSORLP00000015051	ENSORLP00000038189	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.992
H2M970_ORYLA	uba52	ENSORLP00000015051	ENSORLP00000010731	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.552
H2M970_ORYLA	ubc	ENSORLP00000015051	ENSORLP00000015065	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.960
H2M970_ORYLA	usp9x	ENSORLP00000015051	ENSORLP00000013500	Ubiquitin-like domain-containing protein.	Ubiquitin specific peptidase 9; Belongs to the peptidase C19 family.	0.521
LOC101159109	LOC101159747	ENSORLP00000019646	ENSORLP00000015020	Mothers against decapentaplegic homolog.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.943
LOC101159109	LOC101162905	ENSORLP00000019646	ENSORLP00000039541	Mothers against decapentaplegic homolog.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.943
LOC101159109	LOC101163504	ENSORLP00000019646	ENSORLP00000045202	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.979
LOC101159109	LOC101169523	ENSORLP00000019646	ENSORLP00000002748	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.900
LOC101159109	LOC101171238	ENSORLP00000019646	ENSORLP00000004934	Mothers against decapentaplegic homolog.	V-ski avian sarcoma viral oncogene homolog b.	0.659
LOC101159109	LOC101173585	ENSORLP00000019646	ENSORLP00000026472	Mothers against decapentaplegic homolog.	TGFB-induced factor homeobox 1.	0.944
LOC101159109	LOC101173916	ENSORLP00000019646	ENSORLP00000029700	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.979
LOC101159109	LOC101174179	ENSORLP00000019646	ENSORLP00000028927	Mothers against decapentaplegic homolog.	Homeobox domain-containing protein.	0.944
LOC101159109	SMAD4	ENSORLP00000019646	ENSORLP00000006328	Mothers against decapentaplegic homolog.	Mothers against decapentaplegic homolog.	0.988
LOC101159109	ncor1	ENSORLP00000019646	ENSORLP00000015017	Mothers against decapentaplegic homolog.	Nuclear receptor corepressor 1.	0.456
LOC101159109	ncor2	ENSORLP00000019646	ENSORLP00000017559	Mothers against decapentaplegic homolog.	Nuclear receptor corepressor 2.	0.456
LOC101159109	nedd4l	ENSORLP00000019646	ENSORLP00000007519	Mothers against decapentaplegic homolog.	NEDD4 like E3 ubiquitin protein ligase.	0.642
LOC101159109	parp1	ENSORLP00000019646	ENSORLP00000017176	Mothers against decapentaplegic homolog.	Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.	0.559