12 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H2M970_ORYLA	Ubiquitin-like domain-containing protein. (129 aa)
	ubc	Ubiquitin B. (782 aa)
	LOC101160355	Deltex 4, E3 ubiquitin ligase a. (772 aa)
	LOC101158892	Interferon regulatory factor 3. (463 aa)
	rps27a	Ribosomal protein S27a. (195 aa)
	LOC101163297	Uncharacterized protein. (751 aa)
	trim32	Tripartite motif containing 32. (622 aa)
	tbk1	TANK-binding kinase 1. (665 aa)
	DDX41	Uncharacterized protein. (614 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	sting1	Transmembrane protein 173. (379 aa)
	trim13	Tripartite motif containing 13. (423 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX41	LOC101158892	ENSORLP00000008395	ENSORLP00000033054	Uncharacterized protein.	Interferon regulatory factor 3.	0.556
DDX41	sting1	ENSORLP00000008395	ENSORLP00000012242	Uncharacterized protein.	Transmembrane protein 173.	0.554
DDX41	tbk1	ENSORLP00000008395	ENSORLP00000040771	Uncharacterized protein.	TANK-binding kinase 1.	0.428
DDX41	ubc	ENSORLP00000008395	ENSORLP00000015065	Uncharacterized protein.	Ubiquitin B.	0.586
H2M970_ORYLA	LOC101160355	ENSORLP00000015051	ENSORLP00000030926	Ubiquitin-like domain-containing protein.	Deltex 4, E3 ubiquitin ligase a.	0.417
H2M970_ORYLA	LOC101163297	ENSORLP00000015051	ENSORLP00000038722	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.417
H2M970_ORYLA	rps27a	ENSORLP00000015051	ENSORLP00000038189	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.992
H2M970_ORYLA	tbk1	ENSORLP00000015051	ENSORLP00000040771	Ubiquitin-like domain-containing protein.	TANK-binding kinase 1.	0.566
H2M970_ORYLA	trim32	ENSORLP00000015051	ENSORLP00000040460	Ubiquitin-like domain-containing protein.	Tripartite motif containing 32.	0.421
H2M970_ORYLA	uba52	ENSORLP00000015051	ENSORLP00000010731	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.552
H2M970_ORYLA	ubc	ENSORLP00000015051	ENSORLP00000015065	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.960
LOC101158892	DDX41	ENSORLP00000033054	ENSORLP00000008395	Interferon regulatory factor 3.	Uncharacterized protein.	0.556
LOC101158892	rps27a	ENSORLP00000033054	ENSORLP00000038189	Interferon regulatory factor 3.	Ribosomal protein S27a.	0.529
LOC101158892	sting1	ENSORLP00000033054	ENSORLP00000012242	Interferon regulatory factor 3.	Transmembrane protein 173.	0.968
LOC101158892	tbk1	ENSORLP00000033054	ENSORLP00000040771	Interferon regulatory factor 3.	TANK-binding kinase 1.	0.976
LOC101158892	trim13	ENSORLP00000033054	ENSORLP00000014853	Interferon regulatory factor 3.	Tripartite motif containing 13.	0.614
LOC101158892	trim32	ENSORLP00000033054	ENSORLP00000040460	Interferon regulatory factor 3.	Tripartite motif containing 32.	0.582
LOC101158892	ubc	ENSORLP00000033054	ENSORLP00000015065	Interferon regulatory factor 3.	Ubiquitin B.	0.509
LOC101160355	H2M970_ORYLA	ENSORLP00000030926	ENSORLP00000015051	Deltex 4, E3 ubiquitin ligase a.	Ubiquitin-like domain-containing protein.	0.417
LOC101160355	rps27a	ENSORLP00000030926	ENSORLP00000038189	Deltex 4, E3 ubiquitin ligase a.	Ribosomal protein S27a.	0.593