21 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fga	Fibrinogen alpha chain. (750 aa)
	fgb	Fibrinogen beta chain. (498 aa)
	LOC101168465	Integrin beta; Belongs to the integrin beta chain family. (754 aa)
	itgb3	Integrin beta; Belongs to the integrin beta chain family. (795 aa)
	LOC101163063	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1b. (1438 aa)
	LOC101167529	RAP1A, member of RAS oncogene family b. (185 aa)
	LOC101171247	RAP1A, member of RAS oncogene family a. (202 aa)
	APBB1IP	Uncharacterized protein. (437 aa)
	LOC101164480	Tyrosine-protein kinase. (551 aa)
	LOC110016423	Uncharacterized protein. (313 aa)
	fn1	Fibronectin-1. (2503 aa)
	bcar1	BCAR1 scaffold protein, Cas family member. (947 aa)
	LOC101172864	Uncharacterized protein. (255 aa)
	tln1	Talin 1. (2541 aa)
	apbb1ip	Amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein. (662 aa)
	LOC101173776	Talin 2a. (2542 aa)
	crk	CRK proto-oncogene, adaptor protein. (315 aa)
	cass4	Cas scaffold protein family member 4. (793 aa)
	nedd9	Neural precursor cell expressed, developmentally down-regulated 9. (784 aa)
	tln2	Talin 2b. (2405 aa)
	SRC	Tyrosine-protein kinase. (544 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APBB1IP	LOC101167529	ENSORLP00000041812	ENSORLP00000007312	Uncharacterized protein.	RAP1A, member of RAS oncogene family b.	0.765
APBB1IP	LOC101171247	ENSORLP00000041812	ENSORLP00000042612	Uncharacterized protein.	RAP1A, member of RAS oncogene family a.	0.765
APBB1IP	LOC101172864	ENSORLP00000041812	ENSORLP00000021855	Uncharacterized protein.	Uncharacterized protein.	0.765
APBB1IP	LOC101173776	ENSORLP00000041812	ENSORLP00000015376	Uncharacterized protein.	Talin 2a.	0.774
APBB1IP	LOC110016423	ENSORLP00000041812	ENSORLP00000033986	Uncharacterized protein.	Uncharacterized protein.	0.541
APBB1IP	bcar1	ENSORLP00000041812	ENSORLP00000023236	Uncharacterized protein.	BCAR1 scaffold protein, Cas family member.	0.499
APBB1IP	cass4	ENSORLP00000041812	ENSORLP00000011772	Uncharacterized protein.	Cas scaffold protein family member 4.	0.418
APBB1IP	crk	ENSORLP00000041812	ENSORLP00000012262	Uncharacterized protein.	CRK proto-oncogene, adaptor protein.	0.541
APBB1IP	nedd9	ENSORLP00000041812	ENSORLP00000011603	Uncharacterized protein.	Neural precursor cell expressed, developmentally down-regulated 9.	0.498
APBB1IP	tln1	ENSORLP00000041812	ENSORLP00000016349	Uncharacterized protein.	Talin 1.	0.774
APBB1IP	tln2	ENSORLP00000041812	ENSORLP00000009759	Uncharacterized protein.	Talin 2b.	0.774
LOC101163063	LOC101167529	ENSORLP00000006622	ENSORLP00000007312	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1b.	RAP1A, member of RAS oncogene family b.	0.679
LOC101163063	LOC101171247	ENSORLP00000006622	ENSORLP00000042612	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1b.	RAP1A, member of RAS oncogene family a.	0.679
LOC101163063	LOC101172864	ENSORLP00000006622	ENSORLP00000021855	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1b.	Uncharacterized protein.	0.679
LOC101163063	LOC101173776	ENSORLP00000006622	ENSORLP00000015376	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1b.	Talin 2a.	0.688
LOC101163063	LOC110016423	ENSORLP00000006622	ENSORLP00000033986	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1b.	Uncharacterized protein.	0.541
LOC101163063	bcar1	ENSORLP00000006622	ENSORLP00000023236	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1b.	BCAR1 scaffold protein, Cas family member.	0.457
LOC101163063	cass4	ENSORLP00000006622	ENSORLP00000011772	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1b.	Cas scaffold protein family member 4.	0.418
LOC101163063	crk	ENSORLP00000006622	ENSORLP00000012262	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1b.	CRK proto-oncogene, adaptor protein.	0.541
LOC101163063	nedd9	ENSORLP00000006622	ENSORLP00000011603	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1b.	Neural precursor cell expressed, developmentally down-regulated 9.	0.457