39 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	grb2	Growth factor receptor-bound protein 2b. (218 aa)
	LOC101172057	Collagen, type V, alpha 2b. (1329 aa)
	H2L8D8_ORYLA	PH domain-containing protein. (1201 aa)
	SPTBN1	Spectrin beta chain; Belongs to the spectrin family. (2144 aa)
	LOC101158674	cAMP responsive element binding protein 1. (315 aa)
	LOC101164656	Procollagen, type IX, alpha 2. (583 aa)
	LOC101170789	Uncharacterized protein. (699 aa)
	ncam2	Zgc:152904. (798 aa)
	LOC101166594	Ribosomal protein S6 kinase. (807 aa)
	col4a5	Collagen, type IV, alpha 5 (Alport syndrome). (1461 aa)
	cntn2	Contactin 2. (1034 aa)
	LOC101175117	Spectrin beta chain; Belongs to the spectrin family. (2290 aa)
	hras	HRas proto-oncogene, GTPase a. (189 aa)
	LOC101159747	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (389 aa)
	H2MBY2_ORYLA	Uncharacterized protein. (497 aa)
	Col5a2	Collagen, type V, alpha 2a. (930 aa)
	LOC101173164	Neural cell adhesion molecule 1a. (872 aa)
	LOC101164035	Spectrin beta chain; Belongs to the spectrin family. (2305 aa)
	LOC101157019	Tyrosine-protein kinase. (537 aa)
	LOC101154954	Zgc:55558. (189 aa)
	LOC101166342	Protein tyrosine phosphatase receptor type Ea. (697 aa)
	LOC101164105	cAMP responsive element binding protein 1b. (329 aa)
	LOC101167564	Ribosomal protein S6 kinase. (787 aa)
	kras	GTPase KRas; Ras proteins bind GDP/GTP and possess intrinsic GTPase activity (By similarity). Plays an important role in the regulation of cell proliferation. (189 aa)
	LOC101171105	PH domain-containing protein. (2320 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (875 aa)
	ENSORLP00000035247	Uncharacterized protein. (422 aa)
	ENSORLP00000035524	Uncharacterized protein. (379 aa)
	ptpra	Receptor-type tyrosine-protein phosphatase alpha. (832 aa)
	ENSORLP00000036752	PH domain-containing protein. (128 aa)
	ENSORLP00000037156	Calponin-homology (CH) domain-containing protein. (523 aa)
	Sptan1	Uncharacterized protein. (173 aa)
	ptpe	Uncharacterized protein. (684 aa)
	ncam1	Neural cell adhesion molecule 1b. (1218 aa)
	LOC101162905	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily. (369 aa)
	LOC101167011	Tyrosine-protein kinase. (526 aa)
	LOC101155789	Spectrin beta chain; Belongs to the spectrin family. (2409 aa)
	st8sia2	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2; Belongs to the glycosyltransferase 29 family. (376 aa)
	LOC101157884	BZIP domain-containing protein. (177 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	LOC101157019	ENSORLP00000034821	ENSORLP00000029844	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein kinase.	0.429
CSDE1	LOC101159747	ENSORLP00000034821	ENSORLP00000015020	Cold shock domain containing E1, RNA-binding.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.459
CSDE1	LOC101162905	ENSORLP00000034821	ENSORLP00000039541	Cold shock domain containing E1, RNA-binding.	Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.	0.459
CSDE1	LOC101167011	ENSORLP00000034821	ENSORLP00000041511	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein kinase.	0.429
CSDE1	grb2	ENSORLP00000034821	ENSORLP00000019097	Cold shock domain containing E1, RNA-binding.	Growth factor receptor-bound protein 2b.	0.691
CSDE1	ptpra	ENSORLP00000034821	ENSORLP00000035899	Cold shock domain containing E1, RNA-binding.	Receptor-type tyrosine-protein phosphatase alpha.	0.436
Col5a2	LOC101172057	ENSORLP00000018383	ENSORLP00000000110	Collagen, type V, alpha 2a.	Collagen, type V, alpha 2b.	0.549
ENSORLP00000035247	ENSORLP00000036752	ENSORLP00000035247	ENSORLP00000036752	Uncharacterized protein.	PH domain-containing protein.	0.889
ENSORLP00000035247	ENSORLP00000037156	ENSORLP00000035247	ENSORLP00000037156	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.974
ENSORLP00000035247	H2L8D8_ORYLA	ENSORLP00000035247	ENSORLP00000002109	Uncharacterized protein.	PH domain-containing protein.	0.754
ENSORLP00000035247	LOC101155789	ENSORLP00000035247	ENSORLP00000041930	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.754
ENSORLP00000035247	LOC101164035	ENSORLP00000035247	ENSORLP00000025871	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.754
ENSORLP00000035247	LOC101171105	ENSORLP00000035247	ENSORLP00000033013	Uncharacterized protein.	PH domain-containing protein.	0.754
ENSORLP00000035247	LOC101175117	ENSORLP00000035247	ENSORLP00000014228	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.754
ENSORLP00000035247	SPTBN1	ENSORLP00000035247	ENSORLP00000002512	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.754
ENSORLP00000035247	ptpra	ENSORLP00000035247	ENSORLP00000035899	Uncharacterized protein.	Receptor-type tyrosine-protein phosphatase alpha.	0.401
ENSORLP00000035524	ENSORLP00000036752	ENSORLP00000035524	ENSORLP00000036752	Uncharacterized protein.	PH domain-containing protein.	0.754
ENSORLP00000035524	ENSORLP00000037156	ENSORLP00000035524	ENSORLP00000037156	Uncharacterized protein.	Calponin-homology (CH) domain-containing protein.	0.891
ENSORLP00000035524	H2L8D8_ORYLA	ENSORLP00000035524	ENSORLP00000002109	Uncharacterized protein.	PH domain-containing protein.	0.754
ENSORLP00000035524	H2MBY2_ORYLA	ENSORLP00000035524	ENSORLP00000016059	Uncharacterized protein.	Uncharacterized protein.	0.916