44 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pdia3	Protein disulfide-isomerase. (493 aa)
	LOC101159642	Calmegin. (747 aa)
	spata5l1	Spermatogenesis associated 5-like 1. (752 aa)
	ubxn1	UBX domain protein 1. (306 aa)
	LOC101160304	Calreticulin. (415 aa)
	LOC101162032	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (904 aa)
	RAD23B	RAD23 homolog B, nucleotide excision repair protein. (472 aa)
	LOC101160348	Membrane-associated ring finger (C3HC4) 11. (317 aa)
	pdia4	Protein disulfide-isomerase A4; Belongs to the protein disulfide isomerase family. (640 aa)
	MARCHF6	Membrane associated ring-CH-type finger 6. (898 aa)
	LOC101155329	Membrane-associated ring finger (C3HC4) 1. (570 aa)
	vcp	Valosin containing protein; Belongs to the AAA ATPase family. (814 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	ngly1	N-glycanase 1. (651 aa)
	LOC101172257	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (830 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	amfr	Autocrine motility factor receptor b. (635 aa)
	H2M970_ORYLA	Ubiquitin-like domain-containing protein. (129 aa)
	ubc	Ubiquitin B. (782 aa)
	uggt1	UDP-glucose glycoprotein glucosyltransferase 1. (1539 aa)
	LOC101168136	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (651 aa)
	LOC101156120	RING-CH-type domain-containing protein. (248 aa)
	MARCHF9	Membrane associated ring-CH-type finger 9. (340 aa)
	psmc1	Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family. (443 aa)
	marchf4	Membrane-associated ring finger (C3HC4) 4. (408 aa)
	LOC101155433	Membrane-associated ring finger (C3HC4) 9. (412 aa)
	LOC101162115	Calreticulin. (373 aa)
	engase	Endo-beta-N-acetylglucosaminidase. (713 aa)
	uggt2	UDP-glucose glycoprotein glucosyltransferase 2. (1356 aa)
	man1b1	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (634 aa)
	LOC101169735	Calreticulin. (412 aa)
	canx	Calnexin. (599 aa)
	marchf8	Membrane-associated ring finger (C3HC4) 8. (287 aa)
	edem1	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (643 aa)
	LOC101168653	RING-CH-type domain-containing protein. (922 aa)
	edem2	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (567 aa)
	marchf7	Membrane-associated ring finger (C3HC4) 7. (807 aa)
	rps27a	Ribosomal protein S27a. (195 aa)
	ganab	Glucosidase, alpha; neutral AB; Belongs to the glycosyl hydrolase 31 family. (951 aa)
	mogs	Mannosyl-oligosaccharide glucosidase. (845 aa)
	derl1	Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family. (253 aa)
	rnf139	Ring finger protein 139. (703 aa)
	LOC101160153	Membrane-associated ring finger (C3HC4) 2. (298 aa)
	rnf103	Ring finger protein 103. (660 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2M970_ORYLA	RAD23B	ENSORLP00000015051	ENSORLP00000007067	Ubiquitin-like domain-containing protein.	RAD23 homolog B, nucleotide excision repair protein.	0.909
H2M970_ORYLA	amfr	ENSORLP00000015051	ENSORLP00000014927	Ubiquitin-like domain-containing protein.	Autocrine motility factor receptor b.	0.739
H2M970_ORYLA	psmc1	ENSORLP00000015051	ENSORLP00000019820	Ubiquitin-like domain-containing protein.	Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.	0.938
H2M970_ORYLA	rnf103	ENSORLP00000015051	ENSORLP00000045195	Ubiquitin-like domain-containing protein.	Ring finger protein 103.	0.559
H2M970_ORYLA	rnf139	ENSORLP00000015051	ENSORLP00000043414	Ubiquitin-like domain-containing protein.	Ring finger protein 139.	0.545
H2M970_ORYLA	rps27a	ENSORLP00000015051	ENSORLP00000038189	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.992
H2M970_ORYLA	spata5l1	ENSORLP00000015051	ENSORLP00000003033	Ubiquitin-like domain-containing protein.	Spermatogenesis associated 5-like 1.	0.833
H2M970_ORYLA	uba52	ENSORLP00000015051	ENSORLP00000010731	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.552
H2M970_ORYLA	ubc	ENSORLP00000015051	ENSORLP00000015065	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.960
H2M970_ORYLA	ubxn1	ENSORLP00000015051	ENSORLP00000003465	Ubiquitin-like domain-containing protein.	UBX domain protein 1.	0.567
H2M970_ORYLA	vcp	ENSORLP00000015051	ENSORLP00000010644	Ubiquitin-like domain-containing protein.	Valosin containing protein; Belongs to the AAA ATPase family.	0.833
LOC101155329	spata5l1	ENSORLP00000009753	ENSORLP00000003033	Membrane-associated ring finger (C3HC4) 1.	Spermatogenesis associated 5-like 1.	0.486
LOC101155329	vcp	ENSORLP00000009753	ENSORLP00000010644	Membrane-associated ring finger (C3HC4) 1.	Valosin containing protein; Belongs to the AAA ATPase family.	0.486
LOC101155433	spata5l1	ENSORLP00000020760	ENSORLP00000003033	Membrane-associated ring finger (C3HC4) 9.	Spermatogenesis associated 5-like 1.	0.486
LOC101155433	vcp	ENSORLP00000020760	ENSORLP00000010644	Membrane-associated ring finger (C3HC4) 9.	Valosin containing protein; Belongs to the AAA ATPase family.	0.486
LOC101156120	spata5l1	ENSORLP00000017493	ENSORLP00000003033	RING-CH-type domain-containing protein.	Spermatogenesis associated 5-like 1.	0.486
LOC101156120	vcp	ENSORLP00000017493	ENSORLP00000010644	RING-CH-type domain-containing protein.	Valosin containing protein; Belongs to the AAA ATPase family.	0.486
LOC101159642	LOC101160304	ENSORLP00000002509	ENSORLP00000003652	Calmegin.	Calreticulin.	0.840
LOC101159642	LOC101162115	ENSORLP00000002509	ENSORLP00000021484	Calmegin.	Calreticulin.	0.842
LOC101159642	LOC101169735	ENSORLP00000002509	ENSORLP00000022552	Calmegin.	Calreticulin.	0.841