41 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101163809	Cylindromatosis (turban tumor syndrome), b. (707 aa)
	LOC101166217	RanBP-type and C3HC4-type zinc finger containing 1. (518 aa)
	traf2	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (523 aa)
	LOC101169745	Sharpin and rbck1 related. (709 aa)
	LOC101162956	Si:dkey-181m9.8. (768 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	LOC101158356	Ubiquitin carboxyl-terminal hydrolase. (383 aa)
	LOC101171857	Component of inhibitor of nuclear factor kappa B kinase complex. (732 aa)
	spata2	Spermatogenesis associated 2. (568 aa)
	LOC101158874	Ubiquitin carboxyl-terminal hydrolase. (643 aa)
	LOC101172593	Tumor necrosis factor a (TNF superfamily, member 2). (279 aa)
	tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1. (504 aa)
	H2M970_ORYLA	Ubiquitin-like domain-containing protein. (129 aa)
	ubc	Ubiquitin B. (782 aa)
	LOC101155367	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (596 aa)
	tnfrsf1a	Tumor necrosis factor receptor superfamily, member 1a. (385 aa)
	CHUK	Component of inhibitor of nuclear factor kappa B kinase complex. (765 aa)
	LOC101172365	TNF superfamily member 10; Belongs to the tumor necrosis factor family. (280 aa)
	LOC101174057	Uncharacterized protein. (1112 aa)
	cyld	Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family. (918 aa)
	LOC101165751	Ubiquitin carboxyl-terminal hydrolase. (401 aa)
	LOC101167626	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (569 aa)
	optn	Optineurin. (533 aa)
	ripk1	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like. (675 aa)
	LOC101155382	Uncharacterized protein. (1085 aa)
	tnfaip3	Tumor necrosis factor, alpha-induced protein 3. (858 aa)
	map3k7	Mitogen-activated protein kinase kinase kinase 7. (595 aa)
	usp4	Ubiquitin specific peptidase 4 (proto-oncogene); Belongs to the peptidase C19 family. (1037 aa)
	otud7b	OTU deubiquitinase 7B. (916 aa)
	ENSORLP00000032097	Uncharacterized protein. (189 aa)
	rack1	Receptor for activated C kinase 1. (317 aa)
	LOC101172600	Baculoviral IAP repeat containing 2. (707 aa)
	ikbkb	Inhibitor of nuclear factor kappa B kinase subunit beta. (801 aa)
	sharpin	SHANK-associated RH domain interacting protein. (476 aa)
	birc7	RING-type domain-containing protein. (399 aa)
	LOC101168449	Cylindromatosis (turban tumor syndrome), like; Belongs to the peptidase C19 family. (769 aa)
	rps27a	Ribosomal protein S27a. (195 aa)
	LOC101166883	X-linked inhibitor of apoptosis. (408 aa)
	tradd	Tnfrsf1a-associated via death domain. (321 aa)
	otud1	OTU deubiquitinase 1. (390 aa)
	LOC105356874	Protein kinase domain-containing protein. (501 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHUK	ENSORLP00000032097	ENSORLP00000016017	ENSORLP00000032097	Component of inhibitor of nuclear factor kappa B kinase complex.	Uncharacterized protein.	0.524
CHUK	H2M970_ORYLA	ENSORLP00000016017	ENSORLP00000015051	Component of inhibitor of nuclear factor kappa B kinase complex.	Ubiquitin-like domain-containing protein.	0.573
CHUK	LOC101155367	ENSORLP00000016017	ENSORLP00000003220	Component of inhibitor of nuclear factor kappa B kinase complex.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.553
CHUK	LOC101155382	ENSORLP00000016017	ENSORLP00000026609	Component of inhibitor of nuclear factor kappa B kinase complex.	Uncharacterized protein.	0.554
CHUK	LOC101162956	ENSORLP00000016017	ENSORLP00000010289	Component of inhibitor of nuclear factor kappa B kinase complex.	Si:dkey-181m9.8.	0.554
CHUK	LOC101163809	ENSORLP00000016017	ENSORLP00000017400	Component of inhibitor of nuclear factor kappa B kinase complex.	Cylindromatosis (turban tumor syndrome), b.	0.562
CHUK	LOC101166217	ENSORLP00000016017	ENSORLP00000007586	Component of inhibitor of nuclear factor kappa B kinase complex.	RanBP-type and C3HC4-type zinc finger containing 1.	0.479
CHUK	LOC101166883	ENSORLP00000016017	ENSORLP00000039982	Component of inhibitor of nuclear factor kappa B kinase complex.	X-linked inhibitor of apoptosis.	0.524
CHUK	LOC101167626	ENSORLP00000016017	ENSORLP00000020860	Component of inhibitor of nuclear factor kappa B kinase complex.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.553
CHUK	LOC101168449	ENSORLP00000016017	ENSORLP00000036637	Component of inhibitor of nuclear factor kappa B kinase complex.	Cylindromatosis (turban tumor syndrome), like; Belongs to the peptidase C19 family.	0.562
CHUK	LOC101169745	ENSORLP00000016017	ENSORLP00000009263	Component of inhibitor of nuclear factor kappa B kinase complex.	Sharpin and rbck1 related.	0.479
CHUK	LOC101171857	ENSORLP00000016017	ENSORLP00000011761	Component of inhibitor of nuclear factor kappa B kinase complex.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.942
CHUK	LOC101172593	ENSORLP00000016017	ENSORLP00000013121	Component of inhibitor of nuclear factor kappa B kinase complex.	Tumor necrosis factor a (TNF superfamily, member 2).	0.836
CHUK	LOC101172600	ENSORLP00000016017	ENSORLP00000006992	Component of inhibitor of nuclear factor kappa B kinase complex.	Baculoviral IAP repeat containing 2.	0.524
CHUK	LOC101174057	ENSORLP00000016017	ENSORLP00000016757	Component of inhibitor of nuclear factor kappa B kinase complex.	Uncharacterized protein.	0.554
CHUK	LOC105356874	ENSORLP00000016017	ENSORLP00000044724	Component of inhibitor of nuclear factor kappa B kinase complex.	Protein kinase domain-containing protein.	0.632
CHUK	birc7	ENSORLP00000016017	ENSORLP00000035991	Component of inhibitor of nuclear factor kappa B kinase complex.	RING-type domain-containing protein.	0.524
CHUK	cyld	ENSORLP00000016017	ENSORLP00000017385	Component of inhibitor of nuclear factor kappa B kinase complex.	Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family.	0.562
CHUK	ikbkb	ENSORLP00000016017	ENSORLP00000003065	Component of inhibitor of nuclear factor kappa B kinase complex.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.953
CHUK	map3k7	ENSORLP00000016017	ENSORLP00000027372	Component of inhibitor of nuclear factor kappa B kinase complex.	Mitogen-activated protein kinase kinase kinase 7.	0.961