STRINGSTRING
actr8 actr8 COPS6 COPS6 parp3 parp3 cetn3 cetn3 cul4b cul4b ruvbl1 ruvbl1 ddb1 ddb1 parp2 parp2 LOC101156200 LOC101156200 nfrkb nfrkb LOC101155777 LOC101155777 ino80e ino80e xpc xpc ENSORLP00000040623 ENSORLP00000040623 rps27a rps27a cops4 cops4 ENSORLP00000033776 ENSORLP00000033776 rad23a rad23a ino80d ino80d LOC101169768 LOC101169768 ino80 ino80 gps1 gps1 LOC101155523 LOC101155523 LOC101173070 LOC101173070 LOC101169951 LOC101169951 YY1 YY1 LOC101173824 LOC101173824 mcrs1 mcrs1 H2MG95_ORYLA H2MG95_ORYLA parp1 parp1 cops7a cops7a wdr76 wdr76 ubc ubc H2M970_ORYLA H2M970_ORYLA tfpt tfpt kxd1 kxd1 LOC101168921 LOC101168921 rpap3 rpap3 ino80c ino80c uba52 uba52 cops5 cops5 cops8 cops8 ino80b ino80b ddb2 ddb2 RAD23B RAD23B LOC101154851 LOC101154851 actr5 actr5 cops2 cops2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
actr8Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily. (651 aa)
COPS6COP9 signalosome subunit 6. (368 aa)
parp3Poly [ADP-ribose] polymerase. (526 aa)
cetn3Centrin 3. (166 aa)
cul4bCullin 4B; Belongs to the cullin family. (845 aa)
ruvbl1RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which exhibits DNA- and nucleosome-activated ATPase activity and catalyzes ATP-dependent nucleosome sliding. (456 aa)
ddb1Damage-specific DNA binding protein 1. (1126 aa)
parp2Poly [ADP-ribose] polymerase. (649 aa)
LOC101156200Von Willebrand factor A domain containing 5B2. (1400 aa)
nfrkbNuclear factor related to kappaB binding protein. (1274 aa)
LOC101155777Uncharacterized protein. (372 aa)
ino80eINO80 complex subunit E. (257 aa)
xpcXeroderma pigmentosum, complementation group C. (925 aa)
ENSORLP00000040623Si:ch73-290k24.6. (299 aa)
rps27aRibosomal protein S27a. (195 aa)
cops4COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (406 aa)
ENSORLP00000033776Si:cabz01080528.1. (633 aa)
rad23aRAD23 homolog A, nucleotide excision repair protein a. (363 aa)
ino80dINO80 complex subunit Da. (1013 aa)
LOC101169768Uncharacterized protein. (510 aa)
ino80INO80 complex ATPase subunit. (1547 aa)
gps1G protein pathway suppressor 1. (492 aa)
LOC101155523Uncharacterized protein. (375 aa)
LOC101173070Uncharacterized protein. (369 aa)
LOC101169951Uncharacterized protein. (330 aa)
YY1YY1 transcription factor b. (378 aa)
LOC101173824Uncharacterized protein. (349 aa)
mcrs1Microspherule protein 1. (460 aa)
H2MG95_ORYLARing-box 1, E3 ubiquitin protein ligase. (82 aa)
parp1Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair. (1015 aa)
cops7aCOP9 constitutive photomorphogenic homolog subunit 7A. (268 aa)
wdr76WD repeat-containing protein 76; Specifically binds 5-hydroxymethylcytosine (5hmC), suggesting that it acts as a specific reader of 5hmC. Belongs to the WD repeat DDB2/WDR76 family. (543 aa)
ubcUbiquitin B. (782 aa)
H2M970_ORYLAUbiquitin-like domain-containing protein. (129 aa)
tfptTCF3 (E2A) fusion partner. (196 aa)
kxd1KxDL motif containing 1. (184 aa)
LOC101168921Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA. (410 aa)
rpap3RNA polymerase II associated protein 3. (608 aa)
ino80cINO80 complex subunit C. (197 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
cops5COP9 signalosome subunit 5. (334 aa)
cops8COP9 signalosome subunit 8. (198 aa)
ino80bINO80 complex subunit B. (338 aa)
ddb2Damage-specific DNA binding protein 2. (488 aa)
RAD23BRAD23 homolog B, nucleotide excision repair protein. (472 aa)
LOC101154851Cullin 4A; Belongs to the cullin family. (612 aa)
actr5Actin related protein 5; Belongs to the actin family. (595 aa)
cops2COP9 signalosome subunit 2. (480 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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