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polr2i polr2i isy1 isy1 cops7a cops7a ubc ubc H2M970_ORYLA H2M970_ORYLA uvssa uvssa gtf2h4 gtf2h4 kxd1 kxd1 LOC101154851 LOC101154851 prpf19 prpf19 polr2d polr2d gtf2h1 gtf2h1 xab2 xab2 cops8 cops8 cops5 cops5 uba52 uba52 ccnh ccnh COPS6 COPS6 cul4b cul4b H2MG95_ORYLA H2MG95_ORYLA polr2f polr2f polr2c polr2c POLR2E POLR2E LOC101158359 LOC101158359 ZNF830 ZNF830 ppie ppie gps1 gps1 nrde2 nrde2 polr2b polr2b xpa xpa gtf2h5 gtf2h5 polr2l polr2l polr2j polr2j LOC101173248 LOC101173248 ercc2 ercc2 LOC101168870 LOC101168870 usp7 usp7 ENSORLP00000033909 ENSORLP00000033909 LOC101167129 LOC101167129 cops4 cops4 gtf2h3 gtf2h3 ppp1r42 ppp1r42 tceanc2 tceanc2 polr2a polr2a rps27a rps27a polr2h polr2h cdk7 cdk7 mnat1 mnat1 ENSORLP00000040513 ENSORLP00000040513 ercc6 ercc6 tcea1 tcea1 aqr aqr LOC101167715 LOC101167715 ddb1 ddb1 cops2 cops2 LOC101160197 LOC101160197 H2LC37_ORYLA H2LC37_ORYLA polr2g polr2g ercc3 ercc3 ercc8 ercc8
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
isy1ISY1 splicing factor homolog. (285 aa)
cops7aCOP9 constitutive photomorphogenic homolog subunit 7A. (268 aa)
ubcUbiquitin B. (782 aa)
H2M970_ORYLAUbiquitin-like domain-containing protein. (129 aa)
uvssaUV-stimulated scaffold protein A. (764 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (460 aa)
kxd1KxDL motif containing 1. (184 aa)
LOC101154851Cullin 4A; Belongs to the cullin family. (612 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
xab2XPA binding protein 2. (848 aa)
cops8COP9 signalosome subunit 8. (198 aa)
cops5COP9 signalosome subunit 5. (334 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
ccnhCyclin H; Belongs to the cyclin family. (386 aa)
COPS6COP9 signalosome subunit 6. (368 aa)
cul4bCullin 4B; Belongs to the cullin family. (845 aa)
H2MG95_ORYLARing-box 1, E3 ubiquitin protein ligase. (82 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
LOC101158359Transcription elongation factor A (SII), 2. (309 aa)
ZNF830Zinc finger protein 830. (324 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (313 aa)
gps1G protein pathway suppressor 1. (492 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1090 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
xpaXeroderma pigmentosum, complementation group A. (277 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (68 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (141 aa)
LOC101173248Transcription elongation factor A (SII), 3. (722 aa)
ercc2Excision repair cross-complementation group 2. (761 aa)
LOC101168870E1A binding protein p300 b. (2760 aa)
usp7Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1227 aa)
ENSORLP00000033909annotation not available (346 aa)
LOC101167129High mobility group nucleosome binding domain 6. (96 aa)
cops4COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (406 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (326 aa)
ppp1r42Protein phosphatase 1, regulatory subunit 42. (274 aa)
tceanc2TFIIS N-terminal domain-containing protein. (226 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
rps27aRibosomal protein S27a. (195 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (391 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
ENSORLP00000040513TFIIS central domain-containing protein. (367 aa)
ercc6Excision repair cross-complementation group 6. (1342 aa)
tcea1Transcription elongation factor A (SII), 1. (311 aa)
aqrAquarius intron-binding spliceosomal factor. (1422 aa)
LOC101167715General transcription factor IIH subunit. (392 aa)
ddb1Damage-specific DNA binding protein 1. (1126 aa)
cops2COP9 signalosome subunit 2. (480 aa)
LOC101160197E1A binding protein p300 a. (2781 aa)
H2LC37_ORYLAUncharacterized protein. (66 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (175 aa)
ercc3Excision repair cross-complementation group 3. (783 aa)
ercc8Excision repair cross-complementation group 8. (401 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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