STRINGSTRING
RCBTB1 RCBTB1 H2M970_ORYLA H2M970_ORYLA ubc ubc pold2 pold2 pole2 pole2 pole3 pole3 cul4b cul4b ddb1 ddb1 pold3 pold3 LOC101160197 LOC101160197 H2LC37_ORYLA H2LC37_ORYLA LOC101167715 LOC101167715 ENSORLP00000044710 ENSORLP00000044710 rfc1 rfc1 aqr aqr tcea1 tcea1 ercc6 ercc6 ENSORLP00000041087 ENSORLP00000041087 ENSORLP00000040513 ENSORLP00000040513 mnat1 mnat1 cdk7 cdk7 polr2h polr2h LOC101172133 LOC101172133 rpa3 rpa3 rps27a rps27a polr2a polr2a tceanc2 tceanc2 pcna pcna gtf2h3 gtf2h3 rfc5 rfc5 LOC101167129 LOC101167129 ENSORLP00000033909 ENSORLP00000033909 usp7 usp7 ENSORLP00000033513 ENSORLP00000033513 LOC101168870 LOC101168870 ercc2 ercc2 LOC101173248 LOC101173248 ercc4 ercc4 meiob meiob polr2g polr2g RPA1 RPA1 rfc3 rfc3 ercc3 ercc3 ercc8 ercc8 LOC101154851 LOC101154851 prpf19 prpf19 rpa1 rpa1 ercc5 ercc5 polr2d polr2d LOC101165789 LOC101165789 gtf2h1 gtf2h1 xab2 xab2 POLE POLE uba52 uba52 polk polk ccnh ccnh Phf3 Phf3 LOC101166554 LOC101166554 kxd1 kxd1 LOC101158359 LOC101158359 isy1 isy1 polr2i polr2i usp40 usp40 H2MG95_ORYLA H2MG95_ORYLA ercc1 ercc1 rpa2 rpa2 polr2f polr2f LOC101161792 LOC101161792 pole4 pole4 ZNF830 ZNF830 ppie ppie nrde2 nrde2 rfc2 rfc2 polr2b polr2b xpa xpa rfc4 rfc4 gtf2h5 gtf2h5 polr2l polr2l rcbtb2 rcbtb2 pold4 pold4 polr2j polr2j polr2c polr2c POLR2E POLR2E bivm bivm gtf2h4 gtf2h4 uvssa uvssa pold1 pold1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
RCBTB1RCC1 and BTB domain containing protein 1. (531 aa)
H2M970_ORYLAUbiquitin-like domain-containing protein. (129 aa)
ubcUbiquitin B. (782 aa)
pold2Polymerase (DNA directed), delta 2, regulatory subunit. (524 aa)
pole2DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family. (528 aa)
pole3CBFD_NFYB_HMF domain-containing protein. (148 aa)
cul4bCullin 4B; Belongs to the cullin family. (845 aa)
ddb1Damage-specific DNA binding protein 1. (1126 aa)
pold3Polymerase (DNA-directed), delta 3, accessory subunit. (441 aa)
LOC101160197E1A binding protein p300 a. (2781 aa)
H2LC37_ORYLAUncharacterized protein. (66 aa)
LOC101167715General transcription factor IIH subunit. (392 aa)
ENSORLP00000044710annotation not available (829 aa)
rfc1Replication factor C subunit 1. (1152 aa)
aqrAquarius intron-binding spliceosomal factor. (1422 aa)
tcea1Transcription elongation factor A (SII), 1. (311 aa)
ercc6Excision repair cross-complementation group 6. (1342 aa)
ENSORLP00000041087TFIIS central domain-containing protein. (314 aa)
ENSORLP00000040513TFIIS central domain-containing protein. (367 aa)
mnat1CDK-activating kinase assembly factor MAT1; Stabilizes the cyclin H-CDK7 complex to form a functional CDK-activating kinase (CAK) enzymatic complex. (311 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (391 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (150 aa)
LOC101172133ATPase family AAA domain containing 5b. (959 aa)
rpa3Replication protein A3. (122 aa)
rps27aRibosomal protein S27a. (195 aa)
polr2aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1966 aa)
tceanc2TFIIS N-terminal domain-containing protein. (226 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (298 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (326 aa)
rfc5Replication factor C (activator 1) 5. (335 aa)
LOC101167129High mobility group nucleosome binding domain 6. (96 aa)
ENSORLP00000033909annotation not available (346 aa)
usp7Ubiquitin specific peptidase 7 (herpes virus-associated); Belongs to the peptidase C19 family. (1227 aa)
ENSORLP00000033513DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (398 aa)
LOC101168870E1A binding protein p300 b. (2760 aa)
ercc2Excision repair cross-complementation group 2. (761 aa)
LOC101173248Transcription elongation factor A (SII), 3. (722 aa)
ercc4Excision repair cross-complementation group 4. (889 aa)
meiobMethionine sulfoxide reductase B1b. (462 aa)
polr2gPolymerase (RNA) II (DNA directed) polypeptide G-like. (175 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (655 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
ercc3Excision repair cross-complementation group 3. (783 aa)
ercc8Excision repair cross-complementation group 8. (401 aa)
LOC101154851Cullin 4A; Belongs to the cullin family. (612 aa)
prpf19Pre-mRNA processing factor 19. (505 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (598 aa)
ercc5Excision repair cross-complementation group 5. (1078 aa)
polr2dPolymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
LOC101165789Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1. (589 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (550 aa)
xab2XPA binding protein 2. (848 aa)
POLEDNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family. (1100 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
polkPolymerase (DNA directed) kappa. (871 aa)
ccnhCyclin H; Belongs to the cyclin family. (386 aa)
Phf3Uncharacterized protein. (475 aa)
LOC101166554ATPase family AAA domain containing 5a. (1758 aa)
kxd1KxDL motif containing 1. (184 aa)
LOC101158359Transcription elongation factor A (SII), 2. (309 aa)
isy1ISY1 splicing factor homolog. (285 aa)
polr2iDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (126 aa)
usp40Ubiquitin specific peptidase 40; Belongs to the peptidase C19 family. (1217 aa)
H2MG95_ORYLARing-box 1, E3 ubiquitin protein ligase. (82 aa)
ercc1Excision repair cross-complementation group 1. (341 aa)
rpa2Replication protein A2. (280 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
LOC101161792SCY domain-containing protein. (126 aa)
pole4Polymerase (DNA-directed), epsilon 4, accessory subunit. (124 aa)
ZNF830Zinc finger protein 830. (324 aa)
ppiePeptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (313 aa)
nrde2NRDE-2, necessary for RNA interference, domain containing. (1090 aa)
rfc2Replication factor C (activator 1) 2. (355 aa)
polr2bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
xpaXeroderma pigmentosum, complementation group A. (277 aa)
rfc4Replication factor C (activator 1) 4. (355 aa)
gtf2h5General transcription factor IIH, polypeptide 5. (71 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (68 aa)
rcbtb2Regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2. (527 aa)
pold4Si:dkey-28b4.7. (108 aa)
polr2jPolymerase (RNA) II (DNA directed) polypeptide J. (141 aa)
polr2cPolymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
POLR2ERNA polymerase II subunit E. (210 aa)
bivmBasic, immunoglobulin-like variable motif containing. (506 aa)
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (460 aa)
uvssaUV-stimulated scaffold protein A. (764 aa)
pold1DNA polymerase. (1107 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.