STRINGSTRING
atr atr fancl fancl ercc4 ercc4 meiob meiob RPA1 RPA1 CENPS CENPS faap100 faap100 proser1 proser1 rpa1 rpa1 fancf fancf dclre1b dclre1b ube2t ube2t uba52 uba52 usp1 usp1 kxd1 kxd1 fanci fanci wdr48 wdr48 H2M970_ORYLA H2M970_ORYLA ubc ubc rpa2 rpa2 fancm fancm eme1 eme1 ercc1 ercc1 dclre1a dclre1a poln poln fancg fancg EME2 EME2 faap24 faap24 nutf2 nutf2 fancb fancb fancc fancc fan1 fan1 mus81 mus81 LOC101173980 LOC101173980 cenpx cenpx rps27a rps27a rpa3 rpa3 LOC110015983 LOC110015983 slx4 slx4 LOC101172571 LOC101172571 ENSORLP00000044710 ENSORLP00000044710
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
atrATR serine/threonine kinase; Belongs to the PI3/PI4-kinase family. (2160 aa)
fanclFA complementation group L. (377 aa)
ercc4Excision repair cross-complementation group 4. (889 aa)
meiobMethionine sulfoxide reductase B1b. (462 aa)
RPA1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (655 aa)
CENPSCentromere protein S. (117 aa)
faap100Si:dkey-57h18.1. (823 aa)
proser1Proline and serine rich 1. (781 aa)
rpa1Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage. (598 aa)
fancfFA complementation group F. (342 aa)
dclre1bDNA cross-link repair 1B. (582 aa)
ube2tUbiquitin-conjugating enzyme E2T (putative). (173 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
usp1Ubiquitin carboxyl-terminal hydrolase. (785 aa)
kxd1KxDL motif containing 1. (184 aa)
fanciFA complementation group I. (1284 aa)
wdr48WD repeat domain 48b. (677 aa)
H2M970_ORYLAUbiquitin-like domain-containing protein. (129 aa)
ubcUbiquitin B. (782 aa)
rpa2Replication protein A2. (280 aa)
fancmUncharacterized protein. (1993 aa)
eme1Essential meiotic structure-specific endonuclease 1. (459 aa)
ercc1Excision repair cross-complementation group 1. (341 aa)
dclre1aC2H2-type domain-containing protein. (548 aa)
polnPolymerase (DNA directed) nu. (1278 aa)
fancgUncharacterized protein. (636 aa)
EME2ERCC4 domain-containing protein. (443 aa)
faap24FA core complex associated protein 24. (209 aa)
nutf2Nuclear transport factor 2. (127 aa)
fancbFA complementation group B. (850 aa)
fanccFA complementation group C. (654 aa)
fan1Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (971 aa)
mus81MUS81 structure-specific endonuclease subunit. (656 aa)
LOC101173980Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA. (269 aa)
cenpxUncharacterized protein. (107 aa)
rps27aRibosomal protein S27a. (195 aa)
rpa3Replication protein A3. (122 aa)
LOC110015983NTF2 domain-containing protein. (165 aa)
slx4SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae). (1590 aa)
LOC101172571FA complementation group D2. (1518 aa)
ENSORLP00000044710annotation not available (829 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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