20 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101173653	Fibronectin type-III domain-containing protein. (588 aa)
	LOC101154761	Signal transducer and activator of transcription. (763 aa)
	LOC101168468	Tyrosine-protein kinase. (1123 aa)
	LOC101158950	LIF receptor subunit alpha a. (972 aa)
	cbl	Cbl proto-oncogene, E3 ubiquitin protein ligase. (946 aa)
	LOC101157629	Tyrosine-protein kinase. (1128 aa)
	crlf1	Cytokine receptor-like factor 1a. (395 aa)
	LOC101163758	Uncharacterized protein. (852 aa)
	il6st	Uncharacterized protein. (868 aa)
	LOC101166903	Interleukin 11a. (200 aa)
	socs3	Suppressor of cytokine signaling 3a. (201 aa)
	LOC101163752	Uncharacterized protein. (396 aa)
	LOC101170625	Uncharacterized protein. (274 aa)
	socs3-2	Uncharacterized protein. (229 aa)
	cntfr	Ciliary neurotrophic factor receptor. (360 aa)
	LOC105357584	Uncharacterized protein. (904 aa)
	clcf1	Cardiotrophin-like cytokine factor 1. (492 aa)
	jak1	Tyrosine-protein kinase. (1170 aa)
	LOC101158476	Cbl proto-oncogene C, E3 ubiquitin protein ligase. (557 aa)
	lif	Uncharacterized protein. (235 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101154761	LOC101157629	ENSORLP00000000200	ENSORLP00000012552	Signal transducer and activator of transcription.	Tyrosine-protein kinase.	0.972
LOC101154761	LOC101168468	ENSORLP00000000200	ENSORLP00000001864	Signal transducer and activator of transcription.	Tyrosine-protein kinase.	0.965
LOC101154761	LOC101173653	ENSORLP00000000200	ENSORLP00000041499	Signal transducer and activator of transcription.	Fibronectin type-III domain-containing protein.	0.511
LOC101154761	jak1	ENSORLP00000000200	ENSORLP00000044142	Signal transducer and activator of transcription.	Tyrosine-protein kinase.	0.978
LOC101154761	socs3	ENSORLP00000000200	ENSORLP00000027499	Signal transducer and activator of transcription.	Suppressor of cytokine signaling 3a.	0.594
LOC101154761	socs3-2	ENSORLP00000000200	ENSORLP00000032561	Signal transducer and activator of transcription.	Uncharacterized protein.	0.562
LOC101157629	LOC101154761	ENSORLP00000012552	ENSORLP00000000200	Tyrosine-protein kinase.	Signal transducer and activator of transcription.	0.972
LOC101157629	LOC101166903	ENSORLP00000012552	ENSORLP00000026318	Tyrosine-protein kinase.	Interleukin 11a.	0.448
LOC101157629	LOC101168468	ENSORLP00000012552	ENSORLP00000001864	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.901
LOC101157629	LOC101173653	ENSORLP00000012552	ENSORLP00000041499	Tyrosine-protein kinase.	Fibronectin type-III domain-containing protein.	0.437
LOC101157629	il6st	ENSORLP00000012552	ENSORLP00000023515	Tyrosine-protein kinase.	Uncharacterized protein.	0.556
LOC101157629	jak1	ENSORLP00000012552	ENSORLP00000044142	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.940
LOC101157629	socs3	ENSORLP00000012552	ENSORLP00000027499	Tyrosine-protein kinase.	Suppressor of cytokine signaling 3a.	0.973
LOC101157629	socs3-2	ENSORLP00000012552	ENSORLP00000032561	Tyrosine-protein kinase.	Uncharacterized protein.	0.753
LOC101158950	LOC101166903	ENSORLP00000004173	ENSORLP00000026318	LIF receptor subunit alpha a.	Interleukin 11a.	0.566
LOC101158950	LOC101173653	ENSORLP00000004173	ENSORLP00000041499	LIF receptor subunit alpha a.	Fibronectin type-III domain-containing protein.	0.662
LOC101158950	LOC105357584	ENSORLP00000004173	ENSORLP00000032747	LIF receptor subunit alpha a.	Uncharacterized protein.	0.900
LOC101158950	clcf1	ENSORLP00000004173	ENSORLP00000032924	LIF receptor subunit alpha a.	Cardiotrophin-like cytokine factor 1.	0.922
LOC101158950	cntfr	ENSORLP00000004173	ENSORLP00000032593	LIF receptor subunit alpha a.	Ciliary neurotrophic factor receptor.	0.881
LOC101158950	crlf1	ENSORLP00000004173	ENSORLP00000017550	LIF receptor subunit alpha a.	Cytokine receptor-like factor 1a.	0.495