85 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101172864	Uncharacterized protein. (255 aa)
	lamb1	Laminin, beta 1a. (1808 aa)
	H2LAE2_ORYLA	Tensin 1. (981 aa)
	LOC101161671	Tyrosine-protein phosphatase non-receptor type. (413 aa)
	LOC101156386	Golgi associated, gamma adaptin ear containing, ARF binding protein 3a. (748 aa)
	LOC101164792	Uncharacterized protein. (352 aa)
	LOC101167529	RAP1A, member of RAS oncogene family b. (185 aa)
	hpn	Hepsin; Belongs to the peptidase S1 family. (427 aa)
	SRC	Tyrosine-protein kinase. (544 aa)
	hgs	Hepatocyte growth factor-regulated tyrosine kinase substrate. (766 aa)
	lamc1	Uncharacterized protein. (1595 aa)
	cbl	Cbl proto-oncogene, E3 ubiquitin protein ligase. (946 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	PIK3CA	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1068 aa)
	LOC101168152	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit. (1068 aa)
	hgf	Hepatocyte growth factor; Potent mitogen for mature parenchymal hepatocyte cells, seems to be a hepatotrophic factor, and acts as a growth factor for a broad spectrum of tissues and cell types. Activating ligand for the receptor tyrosine kinase MET by binding to it and promoting its dimerization. Belongs to the peptidase S1 family. Plasminogen subfamily. (712 aa)
	stam2	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2. (496 aa)
	shc1	SHC (Src homology 2 domain containing) transforming protein 1. (449 aa)
	crk	CRK proto-oncogene, adaptor protein. (315 aa)
	lamb3	Uncharacterized protein. (1255 aa)
	crkl	V-crk avian sarcoma virus CT10 oncogene homolog-like. (306 aa)
	hras	HRas proto-oncogene, GTPase a. (189 aa)
	fndc3b	Fibronectin type III domain containing 3Ba. (1209 aa)
	H2M970_ORYLA	Ubiquitin-like domain-containing protein. (129 aa)
	ubc	Ubiquitin B. (782 aa)
	ranbp10	Ran binding protein 10. (688 aa)
	sh3kbp1	SH3-domain kinase binding protein 1. (590 aa)
	LOC101163758	Uncharacterized protein. (852 aa)
	sh3d21	SH3 domain containing 21. (480 aa)
	ptpn1	Tyrosine-protein phosphatase non-receptor type. (432 aa)
	grb2	Growth factor receptor-bound protein 2b. (218 aa)
	cd2ap	CD2-associated protein. (659 aa)
	H2MN86_ORYLA	ADP-ribosylation factor 6b. (112 aa)
	rapgef1	Uncharacterized protein. (881 aa)
	H2MQX0_ORYLA	Si:ch211-241e1.3. (1049 aa)
	spint1	Serine peptidase inhibitor, Kunitz type 1 a. (503 aa)
	TNS3-2	Tensin 3. (1362 aa)
	eps15	Epidermal growth factor receptor pathway substrate 15. (1107 aa)
	stam	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1. (513 aa)
	lama4	Laminin, alpha 4. (1873 aa)
	H2MZJ3_ORYLA	Laminin, alpha 5. (1622 aa)
	met	MET proto-oncogene, receptor tyrosine kinase. (1403 aa)
	LOC101158780	Tyrosine-protein phosphatase non-receptor type. (405 aa)
	ENSORLP00000026362	Fibronectin type-III domain-containing protein. (88 aa)
	LOC101169096	SH3-domain GRB2-like 3a. (371 aa)
	SHC4	SHC adaptor protein 4. (534 aa)
	LOC101155008	SH3 domain containing GRB2 like 2a, endophilin A1. (374 aa)
	ENSORLP00000027628	Fibrillar collagen NC1 domain-containing protein. (152 aa)
	ENSORLP00000028232	Fibronectin type-III domain-containing protein. (94 aa)
	ENSORLP00000028248	Fibrillar collagen NC1 domain-containing protein. (111 aa)
	lrig1	Leucine-rich repeats and immunoglobulin-like domains 1. (1034 aa)
	dock7	Dedicator of cytokinesis 7; Belongs to the DOCK family. (2110 aa)
	ENSORLP00000029802	Uncharacterized protein. (470 aa)
	LOC101154954	Zgc:55558. (189 aa)
	LOC101158464	Rap guanine nucleotide exchange factor (GEF) 1b. (1184 aa)
	LOC101175207	Serine peptidase inhibitor, Kunitz type 1 a. (493 aa)
	ENSORLP00000031792	MANSC domain-containing protein. (197 aa)
	kras	GTPase KRas; Ras proteins bind GDP/GTP and possess intrinsic GTPase activity (By similarity). Plays an important role in the regulation of cell proliferation. (189 aa)
	LOC101156437	Uncharacterized protein. (898 aa)
	ENSORLP00000033603	Fibronectin type-III domain-containing protein. (94 aa)
	LOC110016423	Uncharacterized protein. (313 aa)
	ENSORLP00000034087	Fibronectin type-III domain-containing protein. (94 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (875 aa)
	Col27a1	LAM_G_DOMAIN domain-containing protein. (228 aa)
	LOC101164480	Tyrosine-protein kinase. (551 aa)
	lamb2	Laminin, beta 2 (laminin S). (1797 aa)
	Lama5	Uncharacterized protein. (113 aa)
	ranbp9	Uncharacterized protein. (835 aa)
	ENSORLP00000038114	Fibrillar collagen NC1 domain-containing protein. (112 aa)
	rps27a	Ribosomal protein S27a. (195 aa)
	ENSORLP00000038328	annotation not available (94 aa)
	LOC101159839	RAB4B, member RAS oncogene family. (244 aa)
	LOC101155555	Tensin 1b. (1736 aa)
	gga3	Golgi associated, gamma adaptin ear containing, ARF binding protein 3b. (699 aa)
	lamc3	Laminin, gamma 3. (1645 aa)
	tns4	Tensin 4. (559 aa)
	LOC101160542	Uncharacterized protein. (351 aa)
	LOC101157091	PH domain-containing protein. (761 aa)
	fndc3a	Fibronectin type III domain containing 3A. (1244 aa)
	gab1	GRB2-associated binding protein 1. (795 aa)
	LOC101171247	RAP1A, member of RAS oncogene family a. (202 aa)
	ENSORLP00000043583	Uncharacterized protein. (295 aa)
	rab4a	RAB4a, member RAS oncogene family. (213 aa)
	LOC101158476	Cbl proto-oncogene C, E3 ubiquitin protein ligase. (557 aa)
	ENSORLP00000045804	Uncharacterized protein. (534 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	H2M970_ORYLA	ENSORLP00000034821	ENSORLP00000015051	Cold shock domain containing E1, RNA-binding.	Ubiquitin-like domain-containing protein.	0.456
CSDE1	LOC101158464	ENSORLP00000034821	ENSORLP00000030168	Cold shock domain containing E1, RNA-binding.	Rap guanine nucleotide exchange factor (GEF) 1b.	0.414
CSDE1	LOC101164480	ENSORLP00000034821	ENSORLP00000036233	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein kinase.	0.417
CSDE1	LOC101168152	ENSORLP00000034821	ENSORLP00000011212	Cold shock domain containing E1, RNA-binding.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	0.530
CSDE1	PIK3CA	ENSORLP00000034821	ENSORLP00000011211	Cold shock domain containing E1, RNA-binding.	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit.	0.530
CSDE1	SHC4	ENSORLP00000034821	ENSORLP00000027207	Cold shock domain containing E1, RNA-binding.	SHC adaptor protein 4.	0.419
CSDE1	SRC	ENSORLP00000034821	ENSORLP00000008431	Cold shock domain containing E1, RNA-binding.	Tyrosine-protein kinase.	0.417
CSDE1	grb2	ENSORLP00000034821	ENSORLP00000019097	Cold shock domain containing E1, RNA-binding.	Growth factor receptor-bound protein 2b.	0.691
CSDE1	met	ENSORLP00000034821	ENSORLP00000024532	Cold shock domain containing E1, RNA-binding.	MET proto-oncogene, receptor tyrosine kinase.	0.640
CSDE1	rapgef1	ENSORLP00000034821	ENSORLP00000020777	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.414
CSDE1	rps27a	ENSORLP00000034821	ENSORLP00000038189	Cold shock domain containing E1, RNA-binding.	Ribosomal protein S27a.	0.481
CSDE1	shc1	ENSORLP00000034821	ENSORLP00000012223	Cold shock domain containing E1, RNA-binding.	SHC (Src homology 2 domain containing) transforming protein 1.	0.419
CSDE1	uba52	ENSORLP00000034821	ENSORLP00000010731	Cold shock domain containing E1, RNA-binding.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.456
CSDE1	ubc	ENSORLP00000034821	ENSORLP00000015065	Cold shock domain containing E1, RNA-binding.	Ubiquitin B.	0.539
Col27a1	ENSORLP00000027628	ENSORLP00000035514	ENSORLP00000027628	LAM_G_DOMAIN domain-containing protein.	Fibrillar collagen NC1 domain-containing protein.	0.897
Col27a1	ENSORLP00000028248	ENSORLP00000035514	ENSORLP00000028248	LAM_G_DOMAIN domain-containing protein.	Fibrillar collagen NC1 domain-containing protein.	0.580
ENSORLP00000026362	met	ENSORLP00000026362	ENSORLP00000024532	Fibronectin type-III domain-containing protein.	MET proto-oncogene, receptor tyrosine kinase.	0.683
ENSORLP00000027628	Col27a1	ENSORLP00000027628	ENSORLP00000035514	Fibrillar collagen NC1 domain-containing protein.	LAM_G_DOMAIN domain-containing protein.	0.897
ENSORLP00000028232	met	ENSORLP00000028232	ENSORLP00000024532	Fibronectin type-III domain-containing protein.	MET proto-oncogene, receptor tyrosine kinase.	0.683
ENSORLP00000028248	Col27a1	ENSORLP00000028248	ENSORLP00000035514	Fibrillar collagen NC1 domain-containing protein.	LAM_G_DOMAIN domain-containing protein.	0.580