61 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101169236	WW domain-containing protein. (544 aa)
	pex5l	Peroxisomal biogenesis factor 5-like a. (634 aa)
	LOC101155571	Histone H2B; Belongs to the histone H2B family. (124 aa)
	LOC101155571-2	Histone H2B 1/2. (124 aa)
	LOC101158902	Ubiquitin-conjugating enzyme E2D 3; Belongs to the ubiquitin-conjugating enzyme family. (148 aa)
	cdc73	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae). (529 aa)
	Pex2	Peroxisomal biogenesis factor 2. (321 aa)
	LOC101170318	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)
	LOC101172956	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (161 aa)
	pcna	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (298 aa)
	wdr61	WD repeat domain 61. (305 aa)
	ENSORLP00000038070	Zgc:171759; Belongs to the histone H2B family. (207 aa)
	rnf20	E3 ubiquitin protein ligase. (1067 aa)
	rps27a	Ribosomal protein S27a. (195 aa)
	LOC101169003	Protein YIPF. (252 aa)
	shprh	SNF2 histone linker PHD RING helicase. (1716 aa)
	UBE2D1	Ubiquitin-conjugating enzyme E2D 1a; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	rad18	RAD18 E3 ubiquitin protein ligase. (492 aa)
	LOC101155571-3	Histone H2B 1/2. (124 aa)
	pex14	Peroxisomal biogenesis factor 14. (374 aa)
	ENSORLP00000042896	annotation not available (132 aa)
	LOC101155571-4	Histone H2B 1/2. (124 aa)
	ENSORLP00000045626	Histone H2B; Belongs to the histone H2B family. (199 aa)
	ube2a	Ubiquitin-conjugating enzyme E2A (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	ube2b	Ubiquitin-conjugating enzyme E2B (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	H2L736_ORYLA	Histone H2B; Belongs to the histone H2B family. (132 aa)
	yipf5	Protein YIPF. (254 aa)
	pex13	Peroxisomal biogenesis factor 13. (422 aa)
	yipf4	Protein YIPF. (246 aa)
	leo1	LEO1 homolog, Paf1/RNA polymerase II complex component. (638 aa)
	wac	WW domain containing adaptor with coiled-coil a. (544 aa)
	prkdc	Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (3962 aa)
	slc39a13	Solute carrier family 39 member 13. (379 aa)
	LOC101172193	Peroxisomal biogenesis factor 5-like b. (603 aa)
	ctr9	CTR9 homolog, Paf1/RNA polymerase II complex component. (1144 aa)
	rnf40	E3 ubiquitin protein ligase. (999 aa)
	LOC101154878	Ubiquitin-conjugating enzyme E2E 1; Belongs to the ubiquitin-conjugating enzyme family. (191 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	LOC101162152	Ras-related GTP binding A. (315 aa)
	rtf1	RTF1 homolog, Paf1/RNA polymerase II complex component. (673 aa)
	ube2d2	Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	ube2n	Ubiquitin-conjugating enzyme E2Nb; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
	H2M970_ORYLA	Ubiquitin-like domain-containing protein. (129 aa)
	ubc	Ubiquitin B. (782 aa)
	hltf	Helicase-like transcription factor. (1037 aa)
	rnf152	Ring finger protein 152. (205 aa)
	rnf181	Ring finger protein 181. (157 aa)
	LOC101156678	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (194 aa)
	LOC110016721	Ubiquitin-conjugating enzyme E2E 2; Belongs to the ubiquitin-conjugating enzyme family. (201 aa)
	pex10	Peroxisomal biogenesis factor 10. (320 aa)
	pex12	Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family. (337 aa)
	ube2l3	Ubiquitin-conjugating enzyme E2L 3b; Belongs to the ubiquitin-conjugating enzyme family. (189 aa)
	LOC101155732	Ubiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	cinp	Cyclin-dependent kinase 2 interacting protein. (217 aa)
	tmem129	Transmembrane protein 129, E3 ubiquitin protein ligase. (373 aa)
	paf1	PAF1 homolog, Paf1/RNA polymerase II complex component. (534 aa)
	ENSORLP00000026261	UBIQUITIN_CONJUGAT_2 domain-containing protein. (153 aa)
	pex5	Peroxisomal biogenesis factor 5. (680 aa)
	ube2v2	Ubiquitin-conjugating enzyme E2 variant 2. (177 aa)
	rnf144a	RBR-type E3 ubiquitin transferase. (295 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000026261	H2M970_ORYLA	ENSORLP00000026261	ENSORLP00000015051	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.838
ENSORLP00000026261	LOC101154878	ENSORLP00000026261	ENSORLP00000010225	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2E 1; Belongs to the ubiquitin-conjugating enzyme family.	0.679
ENSORLP00000026261	LOC101155732	ENSORLP00000026261	ENSORLP00000022619	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin conjugating enzyme E2 A, like; Belongs to the ubiquitin-conjugating enzyme family.	0.730
ENSORLP00000026261	LOC101156678	ENSORLP00000026261	ENSORLP00000020580	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.679
ENSORLP00000026261	LOC101158902	ENSORLP00000026261	ENSORLP00000034354	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2D 3; Belongs to the ubiquitin-conjugating enzyme family.	0.684
ENSORLP00000026261	LOC101170318	ENSORLP00000026261	ENSORLP00000036122	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.941
ENSORLP00000026261	LOC101172956	ENSORLP00000026261	ENSORLP00000036185	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.684
ENSORLP00000026261	LOC110016721	ENSORLP00000026261	ENSORLP00000020581	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2E 2; Belongs to the ubiquitin-conjugating enzyme family.	0.679
ENSORLP00000026261	UBE2D1	ENSORLP00000026261	ENSORLP00000039476	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2D 1a; Belongs to the ubiquitin-conjugating enzyme family.	0.684
ENSORLP00000026261	hltf	ENSORLP00000026261	ENSORLP00000015433	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Helicase-like transcription factor.	0.870
ENSORLP00000026261	pcna	ENSORLP00000026261	ENSORLP00000037447	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.778
ENSORLP00000026261	prkdc	ENSORLP00000026261	ENSORLP00000006867	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family.	0.551
ENSORLP00000026261	rad18	ENSORLP00000026261	ENSORLP00000040250	UBIQUITIN_CONJUGAT_2 domain-containing protein.	RAD18 E3 ubiquitin protein ligase.	0.763
ENSORLP00000026261	rps27a	ENSORLP00000026261	ENSORLP00000038189	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ribosomal protein S27a.	0.944
ENSORLP00000026261	shprh	ENSORLP00000026261	ENSORLP00000038747	UBIQUITIN_CONJUGAT_2 domain-containing protein.	SNF2 histone linker PHD RING helicase.	0.793
ENSORLP00000026261	uba52	ENSORLP00000026261	ENSORLP00000010731	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.838
ENSORLP00000026261	ubc	ENSORLP00000026261	ENSORLP00000015065	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin B.	0.949
ENSORLP00000026261	ube2a	ENSORLP00000026261	ENSORLP00000001134	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2A (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family.	0.730
ENSORLP00000026261	ube2b	ENSORLP00000026261	ENSORLP00000001156	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2B (RAD6 homolog); Belongs to the ubiquitin-conjugating enzyme family.	0.730
ENSORLP00000026261	ube2d2	ENSORLP00000026261	ENSORLP00000012160	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family.	0.684