37 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	crk	CRK proto-oncogene, adaptor protein. (315 aa)
	lamb3	Uncharacterized protein. (1255 aa)
	crkl	V-crk avian sarcoma virus CT10 oncogene homolog-like. (306 aa)
	fndc3b	Fibronectin type III domain containing 3Ba. (1209 aa)
	grb2	Growth factor receptor-bound protein 2b. (218 aa)
	rapgef1	Uncharacterized protein. (881 aa)
	H2MQX0_ORYLA	Si:ch211-241e1.3. (1049 aa)
	TNS3-2	Tensin 3. (1362 aa)
	LOC101172864	Uncharacterized protein. (255 aa)
	lama4	Laminin, alpha 4. (1873 aa)
	H2MZJ3_ORYLA	Laminin, alpha 5. (1622 aa)
	met	MET proto-oncogene, receptor tyrosine kinase. (1403 aa)
	ENSORLP00000027628	Fibrillar collagen NC1 domain-containing protein. (152 aa)
	ENSORLP00000028248	Fibrillar collagen NC1 domain-containing protein. (111 aa)
	dock7	Dedicator of cytokinesis 7; Belongs to the DOCK family. (2110 aa)
	LOC101158464	Rap guanine nucleotide exchange factor (GEF) 1b. (1184 aa)
	LOC101156437	Uncharacterized protein. (898 aa)
	LOC110016423	Uncharacterized protein. (313 aa)
	Col27a1	LAM_G_DOMAIN domain-containing protein. (228 aa)
	LOC101164480	Tyrosine-protein kinase. (551 aa)
	lamb2	Laminin, beta 2 (laminin S). (1797 aa)
	Lama5	Uncharacterized protein. (113 aa)
	ENSORLP00000038114	Fibrillar collagen NC1 domain-containing protein. (112 aa)
	LOC101155555	Tensin 1b. (1736 aa)
	lamc3	Laminin, gamma 3. (1645 aa)
	tns4	Tensin 4. (559 aa)
	LOC101157091	PH domain-containing protein. (761 aa)
	fndc3a	Fibronectin type III domain containing 3A. (1244 aa)
	gab1	GRB2-associated binding protein 1. (795 aa)
	ENSORLP00000045804	Uncharacterized protein. (534 aa)
	LOC101171247	RAP1A, member of RAS oncogene family a. (202 aa)
	lamb1	Laminin, beta 1a. (1808 aa)
	H2LAE2_ORYLA	Tensin 1. (981 aa)
	LOC101167529	RAP1A, member of RAS oncogene family b. (185 aa)
	SRC	Tyrosine-protein kinase. (544 aa)
	lamc1	Uncharacterized protein. (1595 aa)
	hgf	Hepatocyte growth factor; Potent mitogen for mature parenchymal hepatocyte cells, seems to be a hepatotrophic factor, and acts as a growth factor for a broad spectrum of tissues and cell types. Activating ligand for the receptor tyrosine kinase MET by binding to it and promoting its dimerization. Belongs to the peptidase S1 family. Plasminogen subfamily. (712 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Col27a1	ENSORLP00000027628	ENSORLP00000035514	ENSORLP00000027628	LAM_G_DOMAIN domain-containing protein.	Fibrillar collagen NC1 domain-containing protein.	0.897
Col27a1	ENSORLP00000028248	ENSORLP00000035514	ENSORLP00000028248	LAM_G_DOMAIN domain-containing protein.	Fibrillar collagen NC1 domain-containing protein.	0.580
ENSORLP00000027628	Col27a1	ENSORLP00000027628	ENSORLP00000035514	Fibrillar collagen NC1 domain-containing protein.	LAM_G_DOMAIN domain-containing protein.	0.897
ENSORLP00000028248	Col27a1	ENSORLP00000028248	ENSORLP00000035514	Fibrillar collagen NC1 domain-containing protein.	LAM_G_DOMAIN domain-containing protein.	0.580
ENSORLP00000045804	H2MQX0_ORYLA	ENSORLP00000045804	ENSORLP00000021144	Uncharacterized protein.	Si:ch211-241e1.3.	0.871
ENSORLP00000045804	H2MZJ3_ORYLA	ENSORLP00000045804	ENSORLP00000024500	Uncharacterized protein.	Laminin, alpha 5.	0.544
ENSORLP00000045804	LOC101156437	ENSORLP00000045804	ENSORLP00000032704	Uncharacterized protein.	Uncharacterized protein.	0.746
ENSORLP00000045804	lama4	ENSORLP00000045804	ENSORLP00000022539	Uncharacterized protein.	Laminin, alpha 4.	0.833
ENSORLP00000045804	lamb1	ENSORLP00000045804	ENSORLP00000000448	Uncharacterized protein.	Laminin, beta 1a.	0.847
ENSORLP00000045804	lamb2	ENSORLP00000045804	ENSORLP00000036697	Uncharacterized protein.	Laminin, beta 2 (laminin S).	0.847
ENSORLP00000045804	lamb3	ENSORLP00000045804	ENSORLP00000012859	Uncharacterized protein.	Uncharacterized protein.	0.866
ENSORLP00000045804	lamc1	ENSORLP00000045804	ENSORLP00000009303	Uncharacterized protein.	Uncharacterized protein.	0.746
ENSORLP00000045804	lamc3	ENSORLP00000045804	ENSORLP00000039271	Uncharacterized protein.	Laminin, gamma 3.	0.746
H2LAE2_ORYLA	met	ENSORLP00000002850	ENSORLP00000024532	Tensin 1.	MET proto-oncogene, receptor tyrosine kinase.	0.961
H2MQX0_ORYLA	ENSORLP00000045804	ENSORLP00000021144	ENSORLP00000045804	Si:ch211-241e1.3.	Uncharacterized protein.	0.871
H2MQX0_ORYLA	H2MZJ3_ORYLA	ENSORLP00000021144	ENSORLP00000024500	Si:ch211-241e1.3.	Laminin, alpha 5.	0.638
H2MQX0_ORYLA	LOC101156437	ENSORLP00000021144	ENSORLP00000032704	Si:ch211-241e1.3.	Uncharacterized protein.	0.746
H2MQX0_ORYLA	lamb1	ENSORLP00000021144	ENSORLP00000000448	Si:ch211-241e1.3.	Laminin, beta 1a.	0.682
H2MQX0_ORYLA	lamb2	ENSORLP00000021144	ENSORLP00000036697	Si:ch211-241e1.3.	Laminin, beta 2 (laminin S).	0.682
H2MQX0_ORYLA	lamb3	ENSORLP00000021144	ENSORLP00000012859	Si:ch211-241e1.3.	Uncharacterized protein.	0.722