19 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	fndc3a	Fibronectin type III domain containing 3A. (1244 aa)
	LOC101163644	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily. (388 aa)
	LOC101155859	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (215 aa)
	SRC	Tyrosine-protein kinase. (544 aa)
	LOC101156432	Zgc:86598; Belongs to the protein kinase superfamily. (392 aa)
	LOC101175345	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (215 aa)
	ulk1	Unc-51 like autophagy activating kinase 1. (1020 aa)
	LOC101173532	FUN14 domain containing 1. (152 aa)
	atg12	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (117 aa)
	fndc3b	Fibronectin type III domain containing 3Ba. (1209 aa)
	CSNK2A2	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily. (359 aa)
	fundc1	Uncharacterized protein. (165 aa)
	LOC101167046	Unc-51 like autophagy activating kinase 1a. (916 aa)
	LOC101160680	Unc-51 like autophagy activating kinase 2. (1031 aa)
	pgam5	PGAM family member 5, serine/threonine protein phosphatase, mitochondrial. (297 aa)
	atg5	Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
	map1lc3a	Microtubule-associated protein 1 light chain 3 alpha. (121 aa)
	LOC101164480	Tyrosine-protein kinase. (551 aa)
	map1lc3b	RNA-dependent DNA polymerase. (126 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSNK2A2	LOC101155859	ENSORLP00000015608	ENSORLP00000002594	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.947
CSNK2A2	LOC101156432	ENSORLP00000015608	ENSORLP00000008492	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Zgc:86598; Belongs to the protein kinase superfamily.	0.777
CSNK2A2	LOC101163644	ENSORLP00000015608	ENSORLP00000000087	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	0.548
CSNK2A2	LOC101173532	ENSORLP00000015608	ENSORLP00000043618	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	FUN14 domain containing 1.	0.519
CSNK2A2	LOC101175345	ENSORLP00000015608	ENSORLP00000008637	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.947
CSNK2A2	fundc1	ENSORLP00000015608	ENSORLP00000017245	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.519
LOC101155859	CSNK2A2	ENSORLP00000002594	ENSORLP00000015608	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	0.947
LOC101155859	LOC101156432	ENSORLP00000002594	ENSORLP00000008492	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Zgc:86598; Belongs to the protein kinase superfamily.	0.988
LOC101155859	LOC101163644	ENSORLP00000002594	ENSORLP00000000087	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	0.988
LOC101155859	LOC101173532	ENSORLP00000002594	ENSORLP00000043618	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	FUN14 domain containing 1.	0.954
LOC101155859	LOC101175345	ENSORLP00000002594	ENSORLP00000008637	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.900
LOC101155859	fundc1	ENSORLP00000002594	ENSORLP00000017245	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Uncharacterized protein.	0.954
LOC101156432	CSNK2A2	ENSORLP00000008492	ENSORLP00000015608	Zgc:86598; Belongs to the protein kinase superfamily.	Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily.	0.777
LOC101156432	LOC101155859	ENSORLP00000008492	ENSORLP00000002594	Zgc:86598; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.988
LOC101156432	LOC101163644	ENSORLP00000008492	ENSORLP00000000087	Zgc:86598; Belongs to the protein kinase superfamily.	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	0.951
LOC101156432	LOC101173532	ENSORLP00000008492	ENSORLP00000043618	Zgc:86598; Belongs to the protein kinase superfamily.	FUN14 domain containing 1.	0.949
LOC101156432	LOC101175345	ENSORLP00000008492	ENSORLP00000008637	Zgc:86598; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.988
LOC101156432	fundc1	ENSORLP00000008492	ENSORLP00000017245	Zgc:86598; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.949
LOC101160680	LOC101167046	ENSORLP00000040680	ENSORLP00000017355	Unc-51 like autophagy activating kinase 2.	Unc-51 like autophagy activating kinase 1a.	0.908
LOC101160680	LOC101173532	ENSORLP00000040680	ENSORLP00000043618	Unc-51 like autophagy activating kinase 2.	FUN14 domain containing 1.	0.606