26 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	man1b1	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (634 aa)
	LOC101162032	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (904 aa)
	LOC101160348	Membrane-associated ring finger (C3HC4) 11. (317 aa)
	MARCHF6	Membrane associated ring-CH-type finger 6. (898 aa)
	LOC101155329	Membrane-associated ring finger (C3HC4) 1. (570 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	LOC101172257	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (830 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	H2M970_ORYLA	Ubiquitin-like domain-containing protein. (129 aa)
	ubc	Ubiquitin B. (782 aa)
	uggt1	UDP-glucose glycoprotein glucosyltransferase 1. (1539 aa)
	LOC101168136	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (651 aa)
	LOC101156120	RING-CH-type domain-containing protein. (248 aa)
	MARCHF9	Membrane associated ring-CH-type finger 9. (340 aa)
	marchf4	Membrane-associated ring finger (C3HC4) 4. (408 aa)
	LOC101155433	Membrane-associated ring finger (C3HC4) 9. (412 aa)
	uggt2	UDP-glucose glycoprotein glucosyltransferase 2. (1356 aa)
	marchf8	Membrane-associated ring finger (C3HC4) 8. (287 aa)
	edem1	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (643 aa)
	LOC101168653	RING-CH-type domain-containing protein. (922 aa)
	edem2	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (567 aa)
	marchf7	Membrane-associated ring finger (C3HC4) 7. (807 aa)
	rps27a	Ribosomal protein S27a. (195 aa)
	rnf139	Ring finger protein 139. (703 aa)
	LOC101160153	Membrane-associated ring finger (C3HC4) 2. (298 aa)
	rnf103	Ring finger protein 103. (660 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2M970_ORYLA	rnf103	ENSORLP00000015051	ENSORLP00000045195	Ubiquitin-like domain-containing protein.	Ring finger protein 103.	0.559
H2M970_ORYLA	rnf139	ENSORLP00000015051	ENSORLP00000043414	Ubiquitin-like domain-containing protein.	Ring finger protein 139.	0.545
H2M970_ORYLA	rps27a	ENSORLP00000015051	ENSORLP00000038189	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.992
H2M970_ORYLA	uba52	ENSORLP00000015051	ENSORLP00000010731	Ubiquitin-like domain-containing protein.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.552
H2M970_ORYLA	ubc	ENSORLP00000015051	ENSORLP00000015065	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.960
LOC101160153	LOC101160348	ENSORLP00000044860	ENSORLP00000007969	Membrane-associated ring finger (C3HC4) 2.	Membrane-associated ring finger (C3HC4) 11.	0.561
LOC101160348	LOC101160153	ENSORLP00000007969	ENSORLP00000044860	Membrane-associated ring finger (C3HC4) 11.	Membrane-associated ring finger (C3HC4) 2.	0.561
LOC101160348	marchf7	ENSORLP00000007969	ENSORLP00000029899	Membrane-associated ring finger (C3HC4) 11.	Membrane-associated ring finger (C3HC4) 7.	0.558
LOC101168136	man1b1	ENSORLP00000017427	ENSORLP00000022208	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.901
LOC101168653	MARCHF6	ENSORLP00000028562	ENSORLP00000009594	RING-CH-type domain-containing protein.	Membrane associated ring-CH-type finger 6.	0.900
LOC101168653	rnf139	ENSORLP00000028562	ENSORLP00000043414	RING-CH-type domain-containing protein.	Ring finger protein 139.	0.491
MARCHF6	LOC101168653	ENSORLP00000009594	ENSORLP00000028562	Membrane associated ring-CH-type finger 6.	RING-CH-type domain-containing protein.	0.900
MARCHF6	rnf139	ENSORLP00000009594	ENSORLP00000043414	Membrane associated ring-CH-type finger 6.	Ring finger protein 139.	0.491
edem1	uggt1	ENSORLP00000027756	ENSORLP00000017247	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	UDP-glucose glycoprotein glucosyltransferase 1.	0.463
edem1	uggt2	ENSORLP00000027756	ENSORLP00000022148	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	UDP-glucose glycoprotein glucosyltransferase 2.	0.463
edem2	uggt1	ENSORLP00000029819	ENSORLP00000017247	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	UDP-glucose glycoprotein glucosyltransferase 1.	0.500
edem2	uggt2	ENSORLP00000029819	ENSORLP00000022148	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	UDP-glucose glycoprotein glucosyltransferase 2.	0.500
kxd1	rps27a	ENSORLP00000013376	ENSORLP00000038189	KxDL motif containing 1.	Ribosomal protein S27a.	0.839
kxd1	uba52	ENSORLP00000013376	ENSORLP00000010731	KxDL motif containing 1.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.900
kxd1	ubc	ENSORLP00000013376	ENSORLP00000015065	KxDL motif containing 1.	Ubiquitin B.	0.709