48 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	chmp4b	Charged multivesicular body protein 4Bb. (251 aa)
	ENSORLP00000034349	MIT domain-containing protein. (124 aa)
	ENSORLP00000030874	UBA domain-containing protein. (193 aa)
	vps36	Vacuolar protein sorting 36 homolog. (382 aa)
	LOC101166028	Zgc:123278. (182 aa)
	LOC101171305	VPS37C subunit of ESCRT-I. (373 aa)
	LOC105355693	Si:ch211-284f22.3. (298 aa)
	vps37b	Zgc:114173. (280 aa)
	c8h17orf75	Zgc:153240. (392 aa)
	chmp6	Charged multivesicular body protein 6. (221 aa)
	vps37a	VPS37A subunit of ESCRT-I. (395 aa)
	stam	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1. (513 aa)
	LOC101164680	Charged multivesicular body protein 5a. (262 aa)
	zfyve19	Zinc finger, FYVE domain containing 19. (427 aa)
	VPS4B	Vacuolar protein sorting 4 homolog B; Belongs to the AAA ATPase family. (437 aa)
	ZFYVE1	Zinc finger FYVE-type containing 1. (786 aa)
	chmp3	Charged multivesicular body protein 3. (220 aa)
	chmp2b	Charged multivesicular body protein 2Bb. (215 aa)
	vps4a	Vacuolar protein sorting 4 homolog A; Belongs to the AAA ATPase family. (436 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
	LOC101168369	Charged multivesicular body protein 6a. (208 aa)
	hgs	Hepatocyte growth factor-regulated tyrosine kinase substrate. (766 aa)
	ubap1	Ubiquitin associated protein 1. (460 aa)
	vta1	Vesicle (multivesicular body) trafficking 1. (342 aa)
	stam2	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2. (496 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	LOC101156446	Charged multivesicular body protein 4C. (223 aa)
	tm9sf1	Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (594 aa)
	LOC101171319	Uncharacterized protein; Belongs to the AAA ATPase family. (388 aa)
	mvb12a	Uncharacterized protein. (284 aa)
	chmp7	Charged multivesicular body protein 7. (420 aa)
	LOC101164318	Multivesicular body subunit 12Bb. (245 aa)
	LOC101173957	Multivesicular body subunit 12Ba. (294 aa)
	LOC101173541	Uncharacterized protein. (222 aa)
	vps28	Vacuolar protein sorting-associated protein 28 homolog; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (184 aa)
	chmp2a	Charged multivesicular body protein 2A. (220 aa)
	snf8	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (257 aa)
	ubc	Ubiquitin B. (782 aa)
	H2M970_ORYLA	Ubiquitin-like domain-containing protein. (129 aa)
	tsg101	Tumor susceptibility 101a. (384 aa)
	ENSORLP00000043610	Si:ch211-11n16.2. (631 aa)
	LOC101159542	Charged multivesicular body protein 5b. (220 aa)
	LOC101163408	Ubiquitin associated protein 1-like a. (346 aa)
	LOC101168591	Zinc finger, FYVE domain containing 1. (780 aa)
	ENSORLP00000040649	VPS37 C-terminal domain-containing protein. (134 aa)
	ENSORLP00000038626	Ldh_1_N domain-containing protein. (90 aa)
	rps27a	Ribosomal protein S27a. (195 aa)
	vps25	Vacuolar protein sorting 25 homolog. (174 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000030874	ENSORLP00000040649	ENSORLP00000030874	ENSORLP00000040649	UBA domain-containing protein.	VPS37 C-terminal domain-containing protein.	0.587
ENSORLP00000030874	LOC101156446	ENSORLP00000030874	ENSORLP00000013555	UBA domain-containing protein.	Charged multivesicular body protein 4C.	0.592
ENSORLP00000030874	LOC101163408	ENSORLP00000030874	ENSORLP00000041817	UBA domain-containing protein.	Ubiquitin associated protein 1-like a.	0.540
ENSORLP00000030874	LOC101164318	ENSORLP00000030874	ENSORLP00000016634	UBA domain-containing protein.	Multivesicular body subunit 12Bb.	0.588
ENSORLP00000030874	LOC101166028	ENSORLP00000030874	ENSORLP00000029199	UBA domain-containing protein.	Zgc:123278.	0.618
ENSORLP00000030874	LOC101168369	ENSORLP00000030874	ENSORLP00000009323	UBA domain-containing protein.	Charged multivesicular body protein 6a.	0.618
ENSORLP00000030874	LOC101171305	ENSORLP00000030874	ENSORLP00000028007	UBA domain-containing protein.	VPS37C subunit of ESCRT-I.	0.587
ENSORLP00000030874	LOC101173541	ENSORLP00000030874	ENSORLP00000016085	UBA domain-containing protein.	Uncharacterized protein.	0.592
ENSORLP00000030874	LOC101173957	ENSORLP00000030874	ENSORLP00000016554	UBA domain-containing protein.	Multivesicular body subunit 12Ba.	0.588
ENSORLP00000030874	LOC105355693	ENSORLP00000030874	ENSORLP00000026416	UBA domain-containing protein.	Si:ch211-284f22.3.	0.587
ENSORLP00000030874	chmp2a	ENSORLP00000030874	ENSORLP00000015607	UBA domain-containing protein.	Charged multivesicular body protein 2A.	0.643
ENSORLP00000030874	chmp2b	ENSORLP00000030874	ENSORLP00000019886	UBA domain-containing protein.	Charged multivesicular body protein 2Bb.	0.579
ENSORLP00000030874	chmp3	ENSORLP00000030874	ENSORLP00000019948	UBA domain-containing protein.	Charged multivesicular body protein 3.	0.643
ENSORLP00000030874	chmp4b	ENSORLP00000030874	ENSORLP00000034356	UBA domain-containing protein.	Charged multivesicular body protein 4Bb.	0.592
ENSORLP00000030874	chmp6	ENSORLP00000030874	ENSORLP00000025672	UBA domain-containing protein.	Charged multivesicular body protein 6.	0.618
ENSORLP00000030874	mvb12a	ENSORLP00000030874	ENSORLP00000018841	UBA domain-containing protein.	Uncharacterized protein.	0.593
ENSORLP00000030874	snf8	ENSORLP00000030874	ENSORLP00000015573	UBA domain-containing protein.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.643
ENSORLP00000030874	stam	ENSORLP00000030874	ENSORLP00000022395	UBA domain-containing protein.	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.	0.618
ENSORLP00000030874	tsg101	ENSORLP00000030874	ENSORLP00000045855	UBA domain-containing protein.	Tumor susceptibility 101a.	0.618
ENSORLP00000030874	ubap1	ENSORLP00000030874	ENSORLP00000010936	UBA domain-containing protein.	Ubiquitin associated protein 1.	0.540