12 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rps27a	Ribosomal protein S27a. (195 aa)
	traf6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (569 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1. (504 aa)
	ubc	Ubiquitin B. (782 aa)
	LOC101168074	Mitogen-activated protein kinase kinase kinase 20. (666 aa)
	map3k20	Uncharacterized protein. (802 aa)
	tab3	TGF-beta activated kinase 1 (MAP3K7) binding protein 3. (610 aa)
	map3k7	Mitogen-activated protein kinase kinase kinase 7. (595 aa)
	tab2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2. (733 aa)
	LOC101166698	Protein kinase domain-containing protein. (721 aa)
	LOC105356874	Protein kinase domain-containing protein. (501 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101166698	LOC101168074	ENSORLP00000040412	ENSORLP00000018072	Protein kinase domain-containing protein.	Mitogen-activated protein kinase kinase kinase 20.	0.636
LOC101166698	LOC105356874	ENSORLP00000040412	ENSORLP00000044724	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.740
LOC101166698	map3k20	ENSORLP00000040412	ENSORLP00000021833	Protein kinase domain-containing protein.	Uncharacterized protein.	0.636
LOC101166698	map3k7	ENSORLP00000040412	ENSORLP00000027372	Protein kinase domain-containing protein.	Mitogen-activated protein kinase kinase kinase 7.	0.972
LOC101166698	rps27a	ENSORLP00000040412	ENSORLP00000038189	Protein kinase domain-containing protein.	Ribosomal protein S27a.	0.666
LOC101166698	tab1	ENSORLP00000040412	ENSORLP00000013462	Protein kinase domain-containing protein.	TGF-beta activated kinase 1/MAP3K7 binding protein 1.	0.976
LOC101166698	tab2	ENSORLP00000040412	ENSORLP00000030054	Protein kinase domain-containing protein.	TGF-beta activated kinase 1 (MAP3K7) binding protein 2.	0.985
LOC101166698	tab3	ENSORLP00000040412	ENSORLP00000026642	Protein kinase domain-containing protein.	TGF-beta activated kinase 1 (MAP3K7) binding protein 3.	0.931
LOC101166698	traf6	ENSORLP00000040412	ENSORLP00000001290	Protein kinase domain-containing protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.999
LOC101166698	ubc	ENSORLP00000040412	ENSORLP00000015065	Protein kinase domain-containing protein.	Ubiquitin B.	0.666
LOC101168074	LOC101166698	ENSORLP00000018072	ENSORLP00000040412	Mitogen-activated protein kinase kinase kinase 20.	Protein kinase domain-containing protein.	0.636
LOC101168074	map3k20	ENSORLP00000018072	ENSORLP00000021833	Mitogen-activated protein kinase kinase kinase 20.	Uncharacterized protein.	0.902
LOC101168074	rps27a	ENSORLP00000018072	ENSORLP00000038189	Mitogen-activated protein kinase kinase kinase 20.	Ribosomal protein S27a.	0.573
LOC101168074	tab1	ENSORLP00000018072	ENSORLP00000013462	Mitogen-activated protein kinase kinase kinase 20.	TGF-beta activated kinase 1/MAP3K7 binding protein 1.	0.914
LOC101168074	tab2	ENSORLP00000018072	ENSORLP00000030054	Mitogen-activated protein kinase kinase kinase 20.	TGF-beta activated kinase 1 (MAP3K7) binding protein 2.	0.820
LOC101168074	tab3	ENSORLP00000018072	ENSORLP00000026642	Mitogen-activated protein kinase kinase kinase 20.	TGF-beta activated kinase 1 (MAP3K7) binding protein 3.	0.824
LOC101168074	traf6	ENSORLP00000018072	ENSORLP00000001290	Mitogen-activated protein kinase kinase kinase 20.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.908
LOC101168074	ubc	ENSORLP00000018072	ENSORLP00000015065	Mitogen-activated protein kinase kinase kinase 20.	Ubiquitin B.	0.616
LOC105356874	LOC101166698	ENSORLP00000044724	ENSORLP00000040412	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.740
LOC105356874	rps27a	ENSORLP00000044724	ENSORLP00000038189	Protein kinase domain-containing protein.	Ribosomal protein S27a.	0.598