32 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101159503	BH4_2 domain-containing protein. (230 aa)
	zdhhc9	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (392 aa)
	LOC101173734	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (473 aa)
	LOC101172817	Ubiquitin specific peptidase 36; Belongs to the peptidase C19 family. (1119 aa)
	fnta	Farnesyltransferase, CAAX box, alpha. (387 aa)
	kxd1	KxDL motif containing 1. (184 aa)
	abhd17b	Abhydrolase domain containing 17B. (288 aa)
	hras	HRas proto-oncogene, GTPase a. (189 aa)
	ubc	Ubiquitin B. (782 aa)
	ZDHHC18	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (465 aa)
	GOLGA7	Golgin A7. (143 aa)
	prkcq	Protein kinase C; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. PKC subfamily. (692 aa)
	ZDHHC14	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (505 aa)
	icmt	Protein-S-isoprenylcysteine O-methyltransferase. (291 aa)
	churc1	Churchill domain containing 1. (158 aa)
	LOC101154954	Zgc:55558. (189 aa)
	lypla1	Lysophospholipase 1. (241 aa)
	golga7b	Golgin A7 family member B. (158 aa)
	kras	GTPase KRas; Ras proteins bind GDP/GTP and possess intrinsic GTPase activity (By similarity). Plays an important role in the regulation of cell proliferation. (189 aa)
	LOC111947425	Golgin A7. (151 aa)
	rce1	Ras converting CAAX endopeptidase 1a. (318 aa)
	pde6d	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...] (150 aa)
	CSDE1	Cold shock domain containing E1, RNA-binding. (875 aa)
	LOC101165300	Uncharacterized protein. (217 aa)
	LOC101160126	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding. (430 aa)
	rps27a	Ribosomal protein S27a. (195 aa)
	LOC101173294	Abhydrolase domain containing 17A. (330 aa)
	LOC101161510	Peptidase_S9 domain-containing protein. (354 aa)
	arl2	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family. (184 aa)
	usp42	Ubiquitin specific peptidase 42; Belongs to the peptidase C19 family. (1142 aa)
	ENSORLP00000043660	Uncharacterized protein. (277 aa)
	LOC101168845	Erf4 domain-containing protein. (158 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	ENSORLP00000043660	ENSORLP00000034821	ENSORLP00000043660	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.472
CSDE1	GOLGA7	ENSORLP00000034821	ENSORLP00000020255	Cold shock domain containing E1, RNA-binding.	Golgin A7.	0.413
CSDE1	LOC101159503	ENSORLP00000034821	ENSORLP00000041140	Cold shock domain containing E1, RNA-binding.	BH4_2 domain-containing protein.	0.536
CSDE1	LOC101160126	ENSORLP00000034821	ENSORLP00000038098	Cold shock domain containing E1, RNA-binding.	Protein farnesyltransferase subunit beta; Catalyzes the transfer of a farnesyl moiety from farnesyl diphosphate to a cysteine at the fourth position from the C-terminus of several proteins. The beta subunit is responsible for peptide-binding.	0.510
CSDE1	LOC101161510	ENSORLP00000034821	ENSORLP00000039672	Cold shock domain containing E1, RNA-binding.	Peptidase_S9 domain-containing protein.	0.434
CSDE1	LOC101165300	ENSORLP00000034821	ENSORLP00000038040	Cold shock domain containing E1, RNA-binding.	Uncharacterized protein.	0.536
CSDE1	LOC101168845	ENSORLP00000034821	ENSORLP00000045348	Cold shock domain containing E1, RNA-binding.	Erf4 domain-containing protein.	0.413
CSDE1	LOC101173294	ENSORLP00000034821	ENSORLP00000039344	Cold shock domain containing E1, RNA-binding.	Abhydrolase domain containing 17A.	0.434
CSDE1	LOC101173734	ENSORLP00000034821	ENSORLP00000005491	Cold shock domain containing E1, RNA-binding.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.424
CSDE1	LOC111947425	ENSORLP00000034821	ENSORLP00000032077	Cold shock domain containing E1, RNA-binding.	Golgin A7.	0.413
CSDE1	ZDHHC14	ENSORLP00000034821	ENSORLP00000021558	Cold shock domain containing E1, RNA-binding.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.424
CSDE1	ZDHHC18	ENSORLP00000034821	ENSORLP00000017556	Cold shock domain containing E1, RNA-binding.	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	0.424
CSDE1	abhd17b	ENSORLP00000034821	ENSORLP00000013545	Cold shock domain containing E1, RNA-binding.	Abhydrolase domain containing 17B.	0.434
CSDE1	arl2	ENSORLP00000034821	ENSORLP00000042357	Cold shock domain containing E1, RNA-binding.	ADP-ribosylation factor-like 2; Belongs to the small GTPase superfamily. Arf family.	0.485
CSDE1	churc1	ENSORLP00000034821	ENSORLP00000028917	Cold shock domain containing E1, RNA-binding.	Churchill domain containing 1.	0.510
CSDE1	fnta	ENSORLP00000034821	ENSORLP00000012018	Cold shock domain containing E1, RNA-binding.	Farnesyltransferase, CAAX box, alpha.	0.525
CSDE1	golga7b	ENSORLP00000034821	ENSORLP00000031543	Cold shock domain containing E1, RNA-binding.	Golgin A7 family member B.	0.413
CSDE1	icmt	ENSORLP00000034821	ENSORLP00000024124	Cold shock domain containing E1, RNA-binding.	Protein-S-isoprenylcysteine O-methyltransferase.	0.580
CSDE1	lypla1	ENSORLP00000034821	ENSORLP00000031158	Cold shock domain containing E1, RNA-binding.	Lysophospholipase 1.	0.415
CSDE1	pde6d	ENSORLP00000034821	ENSORLP00000033965	Cold shock domain containing E1, RNA-binding.	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta; Promotes the release of prenylated target proteins from cellular membranes. Modulates the activity of prenylated or palmitoylated Ras family members by regulating their subcellular location. Required for normal ciliary targeting of farnesylated target proteins, such as INPP5E. Modulates the subcellular location of target proteins by acting as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude. Stabilizes ARL3-GTP by decreasing the nucleotide [...]	0.707