STRINGSTRING
pink1 pink1 atg5 atg5 pgam5 pgam5 LOC101155351 LOC101155351 LOC101158306 LOC101158306 LOC101167046 LOC101167046 fundc1 fundc1 LOC111946865 LOC111946865 tomm40 tomm40 ILRUN ILRUN LOC101157969 LOC101157969 mterf3 mterf3 CSNK2A2 CSNK2A2 LOC101169311 LOC101169311 ubc ubc H2M970_ORYLA H2M970_ORYLA fndc3b fndc3b atg12 atg12 ube2n ube2n ulk1 ulk1 kxd1 kxd1 LOC101160205 LOC101160205 uba52 uba52 LOC101172193 LOC101172193 H2LSE1_ORYLA H2LSE1_ORYLA LOC101164232 LOC101164232 LOC101175345 LOC101175345 LOC101156432 LOC101156432 SRC SRC arl13b arl13b LOC101170291 LOC101170291 dync1li2 dync1li2 LOC101162462 LOC101162462 park7 park7 LOC101164165 LOC101164165 H2LEF2_ORYLA H2LEF2_ORYLA LOC101171518 LOC101171518 LOC101171417 LOC101171417 LOC101155859 LOC101155859 cetn3 cetn3 LOC101163644 LOC101163644 LOC101166777 LOC101166777 prkn prkn mfn1 mfn1 dync1i2 dync1i2 tube1 tube1 LOC101167538 LOC101167538 ENSORLP00000044224 ENSORLP00000044224 ENSORLP00000043694 ENSORLP00000043694 LOC101173532 LOC101173532 hdac6 hdac6 LOC101166121 LOC101166121 LOC101168810 LOC101168810 ift88 ift88 tomm6 tomm6 tomm5 tomm5 LOC101160680 LOC101160680 fndc3a fndc3a tomm22 tomm22 usp30 usp30 map1lc3b map1lc3b vdac1 vdac1 LOC101160296 LOC101160296 rps27a rps27a ENSORLP00000037597 ENSORLP00000037597 LOC101164480 LOC101164480 LOC101170318 LOC101170318 ENSORLP00000036119 ENSORLP00000036119 DYNC1I1 DYNC1I1 LOC101155224 LOC101155224 vim vim TOMM7 TOMM7 LOC101174042 LOC101174042 pex5l pex5l ENSORLP00000027619 ENSORLP00000027619 LOC101172049 LOC101172049 mfn2 mfn2 pex5 pex5 LOC101158600 LOC101158600 Atm Atm map1lc3a map1lc3a sqstm1 sqstm1 cftr cftr nbr1 nbr1 LOC101155936 LOC101155936 LOC101162245 LOC101162245 LOC105354455 LOC105354455 H2MNV5_ORYLA H2MNV5_ORYLA tomm70 tomm70 LOC101168255 LOC101168255 LOC101166346 LOC101166346 pofut2 pofut2 LOC101159587 LOC101159587
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pink1PTEN induced kinase 1. (577 aa)
atg5Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
pgam5PGAM family member 5, serine/threonine protein phosphatase, mitochondrial. (297 aa)
LOC101155351Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (450 aa)
LOC101158306Dynein, cytoplasmic 1, intermediate chain 2b. (632 aa)
LOC101167046Unc-51 like autophagy activating kinase 1a. (916 aa)
fundc1Uncharacterized protein. (165 aa)
LOC111946865Pericentrin. (2839 aa)
tomm40Translocase of outer mitochondrial membrane 40 homolog (yeast). (342 aa)
ILRUNInflammation and lipid regulator with UBA-like and NBR1-like domains. (291 aa)
LOC101157969Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (444 aa)
mterf3Mitochondrial transcription termination factor 3. (425 aa)
CSNK2A2Casein kinase 2 alpha 2; Belongs to the protein kinase superfamily. (359 aa)
LOC101169311Translocase of outer mitochondrial membrane 20. (146 aa)
ubcUbiquitin B. (782 aa)
H2M970_ORYLAUbiquitin-like domain-containing protein. (129 aa)
fndc3bFibronectin type III domain containing 3Ba. (1209 aa)
atg12Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (117 aa)
ube2nUbiquitin-conjugating enzyme E2Nb; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
ulk1Unc-51 like autophagy activating kinase 1. (1020 aa)
kxd1KxDL motif containing 1. (184 aa)
LOC101160205Zgc:109986. (313 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
LOC101172193Peroxisomal biogenesis factor 5-like b. (603 aa)
H2LSE1_ORYLADynamin-type G domain-containing protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (331 aa)
LOC101164232Tubulin domain-containing protein. (100 aa)
LOC101175345Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (215 aa)
LOC101156432Zgc:86598; Belongs to the protein kinase superfamily. (392 aa)
SRCTyrosine-protein kinase. (544 aa)
arl13bADP-ribosylation factor-like 13b. (398 aa)
LOC101170291Uncharacterized protein. (331 aa)
dync1li2Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (489 aa)
LOC101162462Dynein light chain. (89 aa)
park7DJ-1. (189 aa)
LOC101164165Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (496 aa)
H2LEF2_ORYLATubulin domain-containing protein. (136 aa)
LOC101171518Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (449 aa)
LOC101171417Dynein light chain. (89 aa)
LOC101155859Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (215 aa)
cetn3Centrin 3. (166 aa)
LOC101163644Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily. (388 aa)
LOC101166777Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (449 aa)
prknE3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (466 aa)
mfn1Mitofusin 1b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (761 aa)
dync1i2Dynein, cytoplasmic 1, intermediate chain 2a. (643 aa)
tube1Tubulin, epsilon 1; Belongs to the tubulin family. (472 aa)
LOC101167538Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (457 aa)
ENSORLP00000044224Fzo_mitofusin domain-containing protein. (297 aa)
ENSORLP00000043694Tubulin domain-containing protein; Belongs to the tubulin family. (333 aa)
LOC101173532FUN14 domain containing 1. (152 aa)
hdac6Histone deacetylase 6. (1073 aa)
LOC101166121Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (473 aa)
LOC101168810Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (451 aa)
ift88Intraflagellar transport 88 homolog. (855 aa)
tomm6Translocase of outer mitochondrial membrane 6 homolog (yeast). (64 aa)
tomm5Translocase of outer mitochondrial membrane 5 homolog (yeast). (115 aa)
LOC101160680Unc-51 like autophagy activating kinase 2. (1031 aa)
fndc3aFibronectin type III domain containing 3A. (1244 aa)
tomm22Translocase of outer mitochondrial membrane 22 homolog (yeast). (135 aa)
usp30Ubiquitin carboxyl-terminal hydrolase. (500 aa)
map1lc3bRNA-dependent DNA polymerase. (126 aa)
vdac1Voltage-dependent anion channel 1. (299 aa)
LOC101160296Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (449 aa)
rps27aRibosomal protein S27a. (195 aa)
ENSORLP00000037597Tubulin domain-containing protein. (130 aa)
LOC101164480Tyrosine-protein kinase. (551 aa)
LOC101170318UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)
ENSORLP00000036119Reverse transcriptase domain-containing protein. (1043 aa)
DYNC1I1Dynein cytoplasmic 1 intermediate chain 1. (647 aa)
LOC101155224Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (514 aa)
vimVimentin like; Belongs to the intermediate filament family. (455 aa)
TOMM7Translocase of outer mitochondrial membrane 7. (55 aa)
LOC101174042Dynein light chain. (89 aa)
pex5lPeroxisomal biogenesis factor 5-like a. (634 aa)
ENSORLP00000027619TAN domain-containing protein. (321 aa)
LOC101172049Translocase of outer mitochondrial membrane 20b. (146 aa)
mfn2Mitofusin 2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (757 aa)
pex5Peroxisomal biogenesis factor 5. (680 aa)
LOC101158600Inflammation and lipid regulator with UBA-like and NBR1-like domains. (348 aa)
AtmUncharacterized protein. (147 aa)
map1lc3aMicrotubule-associated protein 1 light chain 3 alpha. (121 aa)
sqstm1Sequestosome 1. (436 aa)
cftrCystic fibrosis transmembrane conductance regulator; Epithelial ion channel that plays an important role in the regulation of epithelial ion and water transport and fluid homeostasis. Mediates the transport of chloride ions across the cell membrane. Channel activity is coupled to ATP hydrolysis. The ion channel is also permeable to HCO(3-); selectivity depends on the extracellular chloride concentration. Exerts its function also by modulating the activity of other ion channels and transporters. Contributes to the regulation of the pH and the ion content of the epithelial fluid layer. (1502 aa)
nbr1NBR1 autophagy cargo receptor a. (1034 aa)
LOC101155936NBR1 autophagy cargo receptor b. (871 aa)
LOC101162245Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (453 aa)
LOC105354455Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (783 aa)
H2MNV5_ORYLATubulin domain-containing protein. (103 aa)
tomm70Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae). (577 aa)
LOC101168255Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (450 aa)
LOC101166346Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (413 aa)
pofut2Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (481 aa)
LOC101159587Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (416 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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