STRINGSTRING
LOC111948194 LOC111948194 slc15a4 slc15a4 LOC101160104 LOC101160104 LOC101158678 LOC101158678 slc7a4 slc7a4 sf3a1 sf3a1 DDAH1 DDAH1 vars2 vars2 abcb3 abcb3 bf/c2 bf/c2 col11a1 col11a1 H2LGV0_ORYLA H2LGV0_ORYLA skiv2l skiv2l zbtb12 zbtb12 LOC101162450 LOC101162450 clic4 clic4 LOC101163201 LOC101163201 LOC101158865 LOC101158865 ppil4 ppil4 rxra rxra pbx3 pbx3 LOC101158366 LOC101158366 RING1 RING1 LOC101175298 LOC101175298 clic2 clic2 ppt2 ppt2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC111948194Proteasome subunit beta. (275 aa)
slc15a4Solute carrier family 15 member 4. (577 aa)
LOC101160104Pre-B-cell leukemia homeobox 1b. (428 aa)
LOC101158678Proteasome subunit beta. (278 aa)
slc7a4Solute carrier family 7 member 4. (671 aa)
sf3a1Splicing factor 3a, subunit 1. (753 aa)
DDAH1Dimethylarginine dimethylaminohydrolase 1. (283 aa)
vars2Valyl-tRNA synthetase 2, mitochondrial (putative); Belongs to the class-I aminoacyl-tRNA synthetase family. (1089 aa)
abcb3Uncharacterized protein. (736 aa)
bf/c2Bf/C2 protein; Belongs to the peptidase S1 family. (754 aa)
col11a1Collagen, type XI, alpha 1a. (1773 aa)
H2LGV0_ORYLAANK_REP_REGION domain-containing protein. (740 aa)
skiv2lSKI2 homolog, superkiller viralicidic activity 2-like. (1246 aa)
zbtb12Zinc finger and BTB domain containing 12, tandem duplicate 1. (563 aa)
LOC101162450Notch receptor 3. (2434 aa)
clic4Chloride intracellular channel protein; Belongs to the chloride channel CLIC family. (258 aa)
LOC101163201Ral guanine nucleotide dissociation stimulator-like 2. (795 aa)
LOC101158865Dimethylarginine dimethylaminohydrolase 2. (290 aa)
ppil4Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. (480 aa)
rxraRetinoid X receptor, alpha a. (495 aa)
pbx3Homeobox domain-containing protein. (486 aa)
LOC101158366Chloride intracellular channel protein; Belongs to the chloride channel CLIC family. (242 aa)
RING1Ring finger protein 1. (388 aa)
LOC101175298Chloride intracellular channel 6. (897 aa)
clic2Chloride intracellular channel protein; Belongs to the chloride channel CLIC family. (244 aa)
ppt2Palmitoyl-protein thioesterase 2. (305 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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