STRINGSTRING
col1a2 col1a2 Wdr3 Wdr3 LOC101172571 LOC101172571 gmcl1 gmcl1 gsdf gsdf eno1 eno1 gabarap gabarap pcgf2 pcgf2 eif4a3 eif4a3 pabpn1 pabpn1 smc4 smc4 gapdh gapdh cdkn1c cdkn1c rad50 rad50 pcna pcna ttll9 ttll9 trip13 trip13 LOC101164761 LOC101164761 lgi1 lgi1 cdt1 cdt1 sox10 sox10 ddx4 ddx4 aldh9a1 aldh9a1 exosc5 exosc5 LOC101156309 LOC101156309 dhrs4 dhrs4 ccnb3 ccnb3 cpsf1 cpsf1 NFIX NFIX gpx3 gpx3 pdcd6 pdcd6 rplp0 rplp0 nfic nfic rfc4 rfc4 enpp6 enpp6 coll coll dmy dmy DGAT1 DGAT1 cyp17 cyp17 dkc1 dkc1 canx canx adh5-2 adh5-2 nup43 nup43 itga6 itga6 dhrs3 dhrs3 ece1 ece1 AQP4 AQP4 tmbim6 tmbim6 Dnah9 Dnah9 rpsa rpsa mcrs1 mcrs1 ghr-2 ghr-2 ckap5 ckap5 zw10 zw10 podn podn pgk1 pgk1 tgfbr3 tgfbr3 piwil2 piwil2 aatf aatf efhc1 efhc1 topbp1 topbp1 recql5 recql5 nek2 nek2 tekt4 tekt4 pold1 pold1 ggnbp2 ggnbp2 AKR1D1 AKR1D1 tekt3 tekt3 LOC101158755 LOC101158755 msh6 msh6 tpm3 tpm3 timp2 timp2 lhcgr lhcgr NASP NASP dnajb13 dnajb13 anxa4 anxa4 hadha hadha TPM1 TPM1 anxa6 anxa6 LOC101165489 LOC101165489 aldoa aldoa nmd3 nmd3 aldh7a1 aldh7a1 ca6 ca6 nme5 nme5 adh5 adh5 amh amh psmc3ip psmc3ip exosc8 exosc8 ccna1 ccna1 rfc3 rfc3 LOC101157170 LOC101157170 fbl fbl lcmt1 lcmt1 LOC101174651 LOC101174651 xrcc6 xrcc6 TLE3 TLE3 ddx56 ddx56 cstf2 cstf2 cetn3 cetn3 psmd13 psmd13 LOC101170573 LOC101170573 smad7 smad7 glrx5 glrx5 msi2 msi2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
col1a2Collagen, type I, alpha 2. (1356 aa)
Wdr3Uncharacterized protein. (80 aa)
LOC101172571FA complementation group D2. (1518 aa)
gmcl1BTB domain-containing protein. (502 aa)
gsdfGonadal soma derived factor. (216 aa)
eno1Enolase 1a, (alpha). (432 aa)
gabarapGABA(A) receptor-associated protein b. (162 aa)
pcgf2RING-type domain-containing protein. (334 aa)
eif4a3Eukaryotic translation initiation factor 4A3. (416 aa)
pabpn1Poly(A) binding protein, nuclear 1. (292 aa)
smc4Structural maintenance of chromosomes protein. (1296 aa)
gapdhGlyceraldehyde-3-phosphate dehydrogenase. (333 aa)
cdkn1cUncharacterized protein. (210 aa)
rad50RAD50 homolog, double strand break repair protein. (1311 aa)
pcnaProliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family. (298 aa)
ttll9Tubulin tyrosine ligase-like family, member 9. (440 aa)
trip13Thyroid hormone receptor interactor 13; Belongs to the AAA ATPase family. (470 aa)
LOC101164761Rhophilin associated tail protein 1-like. (229 aa)
lgi1Leucine-rich, glioma inactivated 1b. (553 aa)
cdt1Chromatin licensing and DNA replication factor 1. (607 aa)
sox10SRY-box containing gene 10b. (484 aa)
ddx4Uncharacterized protein; Belongs to the DEAD box helicase family. (727 aa)
aldh9a14-trimethylaminobutyraldehyde dehydrogenase; Converts gamma-trimethylaminobutyraldehyde into gamma- butyrobetaine with high efficiency (in vitro). Can catalyze the irreversible oxidation of a broad range of aldehydes to the corresponding acids in an NAD-dependent reaction, but with low efficiency. (505 aa)
exosc5Exosome component 5. (219 aa)
LOC101156309Sodium/potassium-transporting ATPase subunit alpha. (1025 aa)
dhrs4Uncharacterized protein. (282 aa)
ccnb3Cyclin B3; Belongs to the cyclin family. (425 aa)
cpsf1Cleavage and polyadenylation specific factor 1. (1493 aa)
NFIXNuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (611 aa)
gpx3Glutathione peroxidase; Belongs to the glutathione peroxidase family. (173 aa)
pdcd6Programmed cell death 6. (185 aa)
rplp060S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (315 aa)
nficNuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (512 aa)
rfc4Replication factor C (activator 1) 4. (355 aa)
enpp6Ectonucleotide pyrophosphatase/phosphodiesterase 6. (459 aa)
collCollagenase. (470 aa)
dmyDoublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription. (283 aa)
DGAT1O-acyltransferase. (485 aa)
cyp17Steroid 17-alpha-hydroxylase/17,20 lyase; Conversion of pregnenolone and progesterone to their 17- alpha-hydroxylated products and subsequently to dehydroepiandrosterone (DHEA) and androstenedione. Catalyzes both the 17-alpha-hydroxylation and the 17,20-lyase reaction; Belongs to the cytochrome P450 family. (595 aa)
dkc1Dyskeratosis congenita 1, dyskerin. (507 aa)
canxCalnexin. (599 aa)
adh5-2PKS_ER domain-containing protein. (378 aa)
nup43Nucleoporin 43. (372 aa)
itga6Integrin subunit alpha 6; Belongs to the integrin alpha chain family. (1078 aa)
dhrs3Dehydrogenase/reductase (SDR family) member 3b; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (318 aa)
ece1Endothelin converting enzyme 1. (780 aa)
AQP4Aquaporin 4; Belongs to the MIP/aquaporin (TC 1.A.8) family. (326 aa)
tmbim6Testis enhanced gene transcript (BAX inhibitor 1); Belongs to the BI1 family. (237 aa)
Dnah9Uncharacterized protein. (798 aa)
rpsa40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Belongs to the universal ribosomal protein uS2 family. (301 aa)
mcrs1Microspherule protein 1. (460 aa)
ghr-2Uncharacterized protein. (541 aa)
ckap5Cytoskeleton associated protein 5. (1640 aa)
zw10Zw10 kinetochore protein. (767 aa)
podnPodocan. (614 aa)
pgk1Phosphoglycerate kinase. (421 aa)
tgfbr3Transforming growth factor, beta receptor III. (801 aa)
piwil2Uncharacterized protein; Belongs to the argonaute family. (1114 aa)
aatfApoptosis antagonizing transcription factor. (558 aa)
efhc1EF-hand domain (C-terminal) containing 1. (535 aa)
topbp1DNA topoisomerase II binding protein 1. (1460 aa)
recql5ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (989 aa)
nek2NIMA-related kinase 2. (442 aa)
tekt4Tektin 4. (444 aa)
pold1DNA polymerase. (1107 aa)
ggnbp2Gametogenetin binding protein 2. (674 aa)
AKR1D1Aldo-keto reductase family 1 member D1. (326 aa)
tekt3Tektin 3. (486 aa)
LOC101158755Nuclear autoantigenic sperm protein (histone-binding). (427 aa)
msh6DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1381 aa)
tpm3Uncharacterized protein; Belongs to the tropomyosin family. (285 aa)
timp2Tissue inhibitor of metalloproteinase-2a. (221 aa)
lhcgrLutropin-choriogonadotropic hormone receptor; Receptor for lutropin-choriogonadotropic hormone. The activity of this receptor is mediated by G proteins which activate adenylate cyclase; Belongs to the G-protein coupled receptor 1 family. FSH/LSH/TSH subfamily. (696 aa)
NASPNuclear autoantigenic sperm protein. (455 aa)
dnajb13DnaJ heat shock protein family (Hsp40) member B13. (319 aa)
anxa4Annexin. (320 aa)
hadhaHydroxyacyl-CoA dehydrogenase trifunctional multienzyme complex subunit alpha b; Belongs to the enoyl-CoA hydratase/isomerase family. (817 aa)
TPM1Uncharacterized protein; Belongs to the tropomyosin family. (326 aa)
anxa6Annexin. (699 aa)
LOC101165489Triosephosphate isomerase; Triosephosphate isomerase is an extremely efficient metabolic enzyme that catalyzes the interconversion between dihydroxyacetone phosphate (DHAP) and D-glyceraldehyde-3-phosphate (G3P) in glycolysis and gluconeogenesis. (248 aa)
aldoaFructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family. (363 aa)
nmd360S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (504 aa)
aldh7a1Aldehyde dehydrogenase 7 family, member A1; Belongs to the aldehyde dehydrogenase family. (546 aa)
ca6Carbonic anhydrase VI; Belongs to the alpha-carbonic anhydrase family. (536 aa)
nme5NME/NM23 family member 5; Belongs to the NDK family. (203 aa)
adh5S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (489 aa)
amhAnti-muellerian hormone. (496 aa)
psmc3ipPSMC3 interacting protein. (212 aa)
exosc8Exosome component 8. (277 aa)
ccna1Cyclin A1; Belongs to the cyclin family. (413 aa)
rfc3Replication factor C (activator 1) 3. (356 aa)
LOC101157170Dehydrogenase/reductase (SDR family) member 9; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (319 aa)
fblFibrillarin. (348 aa)
lcmt1Leucine carboxyl methyltransferase 1; Methylates the carboxyl group of the C-terminal leucine residue of protein phosphatase 2A catalytic subunits to form alpha- leucine ester residues; Belongs to the methyltransferase superfamily. LCMT family. (334 aa)
LOC101174651Aromatase; Catalyzes the formation of aromatic C18 estrogens from C19 androgens. (518 aa)
xrcc6X-ray repair complementing defective repair in Chinese hamster cells 6. (611 aa)
TLE3TLE family member 3, transcriptional corepressor. (783 aa)
ddx56DEAD (Asp-Glu-Ala-Asp) box helicase 56. (558 aa)
cstf2Cleavage stimulation factor, 3' pre-RNA, subunit 2. (514 aa)
cetn3Centrin 3. (166 aa)
psmd13Proteasome 26S subunit, non-ATPase 13. (378 aa)
LOC101170573Dehydrogenase/reductase 9; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (346 aa)
smad7Mothers against decapentaplegic homolog. (375 aa)
glrx5Glutaredoxin 5 homolog (S. cerevisiae). (156 aa)
msi2Musashi RNA-binding protein 2a. (389 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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