10 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hoxd12	Homeobox D12a. (256 aa)
	Fzd8	Frizzled class receptor 8a; Belongs to the G-protein coupled receptor Fz/Smo family. (573 aa)
	hoxA2a	HoxA2a. (359 aa)
	LOC101162380	Homeobox A13a. (299 aa)
	evx2	Even-skipped homeobox 2. (415 aa)
	hoxd9	HoxD10a. (336 aa)
	hoxd3	Homeobox protein Hox-D3; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family. (400 aa)
	hoxa9	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family. (263 aa)
	pomc	Proopiomelanocortin. (212 aa)
	hoxb5	Homeobox B5b. (281 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101162380	hoxA2a	ENSORLP00000006355	ENSORLP00000006289	Homeobox A13a.	HoxA2a.	0.419
evx2	hoxd12	ENSORLP00000021937	ENSORLP00000021938	Even-skipped homeobox 2.	Homeobox D12a.	0.409
hoxA2a	LOC101162380	ENSORLP00000006289	ENSORLP00000006355	HoxA2a.	Homeobox A13a.	0.419
hoxA2a	hoxb5	ENSORLP00000006289	ENSORLP00000039816	HoxA2a.	Homeobox B5b.	0.482
hoxa9	hoxb5	ENSORLP00000031973	ENSORLP00000039816	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Homeobox B5b.	0.447
hoxb5	hoxA2a	ENSORLP00000039816	ENSORLP00000006289	Homeobox B5b.	HoxA2a.	0.482
hoxb5	hoxa9	ENSORLP00000039816	ENSORLP00000031973	Homeobox B5b.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.447
hoxd12	evx2	ENSORLP00000021938	ENSORLP00000021937	Homeobox D12a.	Even-skipped homeobox 2.	0.409
hoxd3	hoxd9	ENSORLP00000021951	ENSORLP00000021943	Homeobox protein Hox-D3; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family.	HoxD10a.	0.499
hoxd9	hoxd3	ENSORLP00000021943	ENSORLP00000021951	HoxD10a.	Homeobox protein Hox-D3; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis; Belongs to the Antp homeobox family.	0.499