46 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CDC42	Cell division cycle 42. (191 aa)
	LOC101167232	Epsin 1. (643 aa)
	snap23	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (219 aa)
	plek2	Pleckstrin 2. (354 aa)
	tfrc	Transferrin receptor 1a. (769 aa)
	cbl	Cbl proto-oncogene, E3 ubiquitin protein ligase. (946 aa)
	SRC	Tyrosine-protein kinase. (544 aa)
	plek	Pleckstrin. (350 aa)
	itgb3	Integrin beta; Belongs to the integrin beta chain family. (795 aa)
	pde4d	Phosphodiesterase. (816 aa)
	itgb6	Integrin beta; Belongs to the integrin beta chain family. (757 aa)
	itgb8	Integrin beta; Belongs to the integrin beta chain family. (745 aa)
	LOC101169984	Receptor protein-tyrosine kinase. (1191 aa)
	LOC101168465	Integrin beta; Belongs to the integrin beta chain family. (754 aa)
	dab2	DAB adaptor protein 2. (761 aa)
	scamp1	Secretory carrier-associated membrane protein. (337 aa)
	itgb1	Integrin beta; Belongs to the integrin beta chain family. (808 aa)
	LOC101154978	Integrin beta; Belongs to the integrin beta chain family. (793 aa)
	synj1	Synaptojanin 1. (1731 aa)
	numb	NUMB endocytic adaptor protein. (671 aa)
	itgb4	Integrin beta. (1912 aa)
	LOC101168623	Epsin 3a. (600 aa)
	LOC101158708	Zgc:194578. (919 aa)
	reps1	RALBP1 associated Eps domain containing 1. (834 aa)
	LOC101172614	Transferrin receptor 1b. (768 aa)
	rab11fip2	RAB11 family interacting protein 2 (class I). (463 aa)
	LOC101155909	Dynamin 2b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (869 aa)
	LOC101162128	Dynamin 2a; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (890 aa)
	LOC101164480	Tyrosine-protein kinase. (551 aa)
	LOC101154874	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (862 aa)
	pik3c3	Phosphatidylinositol 3-kinase catalytic subunit type 3. (884 aa)
	LOC101171613	Cytohesin 1b. (420 aa)
	rabif	RAB interacting factor. (130 aa)
	dnm1	Dynamin 1a; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (861 aa)
	LOC101170762	Cytohesin 1a. (418 aa)
	itgb5	Integrin beta; Belongs to the integrin beta chain family. (827 aa)
	SCAMP1	Secretory carrier-associated membrane protein. (347 aa)
	pde4dip	SMYLE_N domain-containing protein. (2369 aa)
	eps8	Epidermal growth factor receptor pathway substrate 8a. (832 aa)
	sos1	Son of sevenless homolog 1 (Drosophila). (1297 aa)
	Kif16b	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (369 aa)
	egfr	Receptor protein-tyrosine kinase. (1185 aa)
	LOC101155922	Transforming, acidic coiled-coil containing protein 1. (837 aa)
	Tacc3	TACC_C domain-containing protein. (306 aa)
	disc1	DISC1 scaffold protein. (814 aa)
	LOC101157893	Syntaxin 4; Belongs to the syntaxin family. (297 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC42	LOC101154978	ENSORLP00000015084	ENSORLP00000002461	Cell division cycle 42.	Integrin beta; Belongs to the integrin beta chain family.	0.549
CDC42	LOC101164480	ENSORLP00000015084	ENSORLP00000036233	Cell division cycle 42.	Tyrosine-protein kinase.	0.617
CDC42	LOC101169984	ENSORLP00000015084	ENSORLP00000004470	Cell division cycle 42.	Receptor protein-tyrosine kinase.	0.442
CDC42	LOC101170762	ENSORLP00000015084	ENSORLP00000031007	Cell division cycle 42.	Cytohesin 1a.	0.416
CDC42	LOC101171613	ENSORLP00000015084	ENSORLP00000033410	Cell division cycle 42.	Cytohesin 1b.	0.416
CDC42	SRC	ENSORLP00000015084	ENSORLP00000008431	Cell division cycle 42.	Tyrosine-protein kinase.	0.618
CDC42	cbl	ENSORLP00000015084	ENSORLP00000009540	Cell division cycle 42.	Cbl proto-oncogene, E3 ubiquitin protein ligase.	0.510
CDC42	egfr	ENSORLP00000015084	ENSORLP00000022143	Cell division cycle 42.	Receptor protein-tyrosine kinase.	0.442
CDC42	itgb1	ENSORLP00000015084	ENSORLP00000002462	Cell division cycle 42.	Integrin beta; Belongs to the integrin beta chain family.	0.493
CDC42	itgb3	ENSORLP00000015084	ENSORLP00000005903	Cell division cycle 42.	Integrin beta; Belongs to the integrin beta chain family.	0.401
CDC42	itgb6	ENSORLP00000015084	ENSORLP00000005076	Cell division cycle 42.	Integrin beta; Belongs to the integrin beta chain family.	0.489
CDC42	numb	ENSORLP00000015084	ENSORLP00000044537	Cell division cycle 42.	NUMB endocytic adaptor protein.	0.474
CDC42	plek2	ENSORLP00000015084	ENSORLP00000012210	Cell division cycle 42.	Pleckstrin 2.	0.412
CDC42	rabif	ENSORLP00000015084	ENSORLP00000033240	Cell division cycle 42.	RAB interacting factor.	0.686
CDC42	snap23	ENSORLP00000015084	ENSORLP00000014271	Cell division cycle 42.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.467
CDC42	sos1	ENSORLP00000015084	ENSORLP00000026907	Cell division cycle 42.	Son of sevenless homolog 1 (Drosophila).	0.503
Kif16b	LOC101155909	ENSORLP00000023479	ENSORLP00000036640	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Dynamin 2b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.504
Kif16b	LOC101157893	ENSORLP00000023479	ENSORLP00000015677	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Syntaxin 4; Belongs to the syntaxin family.	0.504
Kif16b	LOC101162128	ENSORLP00000023479	ENSORLP00000036495	Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	Dynamin 2a; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.504
LOC101154874	LOC101158708	ENSORLP00000036078	ENSORLP00000038200	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	Zgc:194578.	0.507