11 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101174729	Aryl hydrocarbon receptor 2. (904 aa)
	ahr	Uncharacterized protein. (879 aa)
	LOC101170159	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (413 aa)
	ache	Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family. (619 aa)
	shh	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (414 aa)
	gsk3b	Glycogen synthase kinase 3 beta, genome duplicate a. (216 aa)
	LOC101170061	Uncharacterized protein. (866 aa)
	LOC101170311	Uncharacterized protein. (723 aa)
	LOC101167730	Glyceraldehyde-3-phosphate dehydrogenase. (335 aa)
	gapdh	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	LOC100125500	Hedgehog protein; Intercellular signal essential for a variety of patterning events during development. (430 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101167730	gapdh	ENSORLP00000028200	ENSORLP00000038395	Glyceraldehyde-3-phosphate dehydrogenase.	Glyceraldehyde-3-phosphate dehydrogenase.	0.934
LOC101170061	LOC101170311	ENSORLP00000022790	ENSORLP00000022794	Uncharacterized protein.	Uncharacterized protein.	0.565
LOC101170061	LOC101174729	ENSORLP00000022790	ENSORLP00000000166	Uncharacterized protein.	Aryl hydrocarbon receptor 2.	0.569
LOC101170061	ahr	ENSORLP00000022790	ENSORLP00000000168	Uncharacterized protein.	Uncharacterized protein.	0.575
LOC101170311	LOC101170061	ENSORLP00000022794	ENSORLP00000022790	Uncharacterized protein.	Uncharacterized protein.	0.565
LOC101170311	LOC101174729	ENSORLP00000022794	ENSORLP00000000166	Uncharacterized protein.	Aryl hydrocarbon receptor 2.	0.565
LOC101170311	ahr	ENSORLP00000022794	ENSORLP00000000168	Uncharacterized protein.	Uncharacterized protein.	0.551
LOC101174729	LOC101170061	ENSORLP00000000166	ENSORLP00000022790	Aryl hydrocarbon receptor 2.	Uncharacterized protein.	0.569
LOC101174729	LOC101170311	ENSORLP00000000166	ENSORLP00000022794	Aryl hydrocarbon receptor 2.	Uncharacterized protein.	0.565
LOC101174729	ahr	ENSORLP00000000166	ENSORLP00000000168	Aryl hydrocarbon receptor 2.	Uncharacterized protein.	0.572
ahr	LOC101170061	ENSORLP00000000168	ENSORLP00000022790	Uncharacterized protein.	Uncharacterized protein.	0.575
ahr	LOC101170311	ENSORLP00000000168	ENSORLP00000022794	Uncharacterized protein.	Uncharacterized protein.	0.551
ahr	LOC101174729	ENSORLP00000000168	ENSORLP00000000166	Uncharacterized protein.	Aryl hydrocarbon receptor 2.	0.572
gapdh	LOC101167730	ENSORLP00000038395	ENSORLP00000028200	Glyceraldehyde-3-phosphate dehydrogenase.	Glyceraldehyde-3-phosphate dehydrogenase.	0.934