STRINGSTRING
LOC101168145 LOC101168145 isl1 isl1 LOC101164480 LOC101164480 ptpra ptpra ndrg4 ndrg4 ENSORLP00000033296 ENSORLP00000033296 LOC100049444 LOC100049444 ccng2 ccng2 LOC100049292 LOC100049292 prox1 prox1 tomm34 tomm34 prim1 prim1 lnx2 lnx2 SRC SRC tp53 tp53
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC101168145Visual system homeobox 1 homolog, chx10-like. (367 aa)
isl1Uncharacterized protein. (349 aa)
LOC101164480Tyrosine-protein kinase. (551 aa)
ptpraReceptor-type tyrosine-protein phosphatase alpha. (832 aa)
ndrg4NDRG family member 4. (607 aa)
ENSORLP00000033296Claudin b. (205 aa)
LOC100049444C-X-C motif chemokine receptor 4; Belongs to the G-protein coupled receptor 1 family. (375 aa)
ccng2Cyclin G2; Belongs to the cyclin family. (322 aa)
LOC100049292Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family. (859 aa)
prox1Prospero domain-containing protein. (824 aa)
tomm34Translocase of outer mitochondrial membrane 34. (309 aa)
prim1DNA primase; Belongs to the eukaryotic-type primase small subunit family. (426 aa)
lnx2Ligand of numb-protein X 2a. (754 aa)
SRCTyrosine-protein kinase. (544 aa)
tp53Cellular tumor antigen p53; Acts as a tumor suppressor in many tumor types; induces growth arrest or apoptosis depending on the physiological circumstances and cell type. Involved in cell cycle regulation as a trans-activator that acts to negatively regulate cell division by controlling a set of genes required for this process. One of the activated genes is an inhibitor of cyclin-dependent kinases. Apoptosis induction seems to be mediated either by stimulation of BAX and FAS antigen expression, or by repression of Bcl-2 expression (By similarity); Belongs to the p53 family. (352 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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