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kfh-g kfh-g iffo1 iffo1 LOC101173945 LOC101173945 LOC101157922 LOC101157922 LOC101158465 LOC101158465 rho rho RHO RHO LOC101167730 LOC101167730 LOC101158336 LOC101158336 gapdh gapdh
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
kfh-gGreen-sensitive opsin; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (351 aa)
iffo1Intermediate filament family orphan 1b; Belongs to the intermediate filament family. (635 aa)
LOC101173945Melanopsin. (556 aa)
LOC101157922Rhodopsin. (366 aa)
LOC101158465Melanopsin. (408 aa)
rhoRhodopsin; Photoreceptor required for image-forming vision at low light intensity. While most salt water fish species use retinal as chromophore, most freshwater fish use 3-dehydroretinal, or a mixture of retinal and 3-dehydroretinal. Light-induced isomerization of 11-cis to all-trans retinal triggers a conformational change that activates signaling via G-proteins. Subsequent receptor phosphorylation mediates displacement of the bound G-protein alpha subunit by arrestin and terminates signaling (By similarity). (354 aa)
RHORhodopsin. (352 aa)
LOC101167730Glyceraldehyde-3-phosphate dehydrogenase. (335 aa)
LOC101158336Rhodopsin. (367 aa)
gapdhGlyceraldehyde-3-phosphate dehydrogenase. (333 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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