23 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	dlx2	Homeobox domain-containing protein. (277 aa)
	hoxb9	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family. (282 aa)
	LOC101175240	Homeobox B13a. (323 aa)
	ENSORLP00000033948	Homeobox A5a. (302 aa)
	LOC101169040	Even-skipped-like1. (234 aa)
	cxcl12	Chemokine (C-X-C motif) ligand 12b; Belongs to the intercrine alpha (chemokine CxC) family. (102 aa)
	tbx4	T-box transcription factor 4. (546 aa)
	mc6ast2	Metalloendopeptidase. (291 aa)
	hoxb5	Homeobox B5b. (281 aa)
	pitx1	Homeobox protein. (316 aa)
	dlx1	Distal-less homeobox 1a. (253 aa)
	evx1	Even-skipped homeobox 1. (375 aa)
	LOC101162380	Homeobox A13a. (299 aa)
	hoxA2a	HoxA2a. (359 aa)
	LOC101160743	Homeobox A1a. (323 aa)
	dlx5	Distal-less homeobox 5a. (296 aa)
	dlx6	Distal-less homeobox 6a. (246 aa)
	dlx3	Distal-less homeobox 3b. (278 aa)
	LOC101166980	Homeobox protein. (340 aa)
	mnep	Metalloendopeptidase. (296 aa)
	hoxa9	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family. (263 aa)
	pitx2	Homeobox protein. (366 aa)
	hoxd9	HoxD10a. (336 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000033948	hoxA2a	ENSORLP00000033948	ENSORLP00000006289	Homeobox A5a.	HoxA2a.	0.471
ENSORLP00000033948	hoxb5	ENSORLP00000033948	ENSORLP00000039816	Homeobox A5a.	Homeobox B5b.	0.491
LOC101160743	LOC101162380	ENSORLP00000006278	ENSORLP00000006355	Homeobox A1a.	Homeobox A13a.	0.410
LOC101162380	LOC101160743	ENSORLP00000006355	ENSORLP00000006278	Homeobox A13a.	Homeobox A1a.	0.410
LOC101162380	hoxA2a	ENSORLP00000006355	ENSORLP00000006289	Homeobox A13a.	HoxA2a.	0.419
LOC101166980	tbx4	ENSORLP00000032079	ENSORLP00000018562	Homeobox protein.	T-box transcription factor 4.	0.434
LOC101175240	hoxb9	ENSORLP00000021307	ENSORLP00000021315	Homeobox B13a.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.439
dlx1	dlx2	ENSORLP00000039727	ENSORLP00000021730	Distal-less homeobox 1a.	Homeobox domain-containing protein.	0.767
dlx2	dlx1	ENSORLP00000021730	ENSORLP00000039727	Homeobox domain-containing protein.	Distal-less homeobox 1a.	0.767
dlx5	dlx6	ENSORLP00000005733	ENSORLP00000005708	Distal-less homeobox 5a.	Distal-less homeobox 6a.	0.843
dlx6	dlx5	ENSORLP00000005708	ENSORLP00000005733	Distal-less homeobox 6a.	Distal-less homeobox 5a.	0.843
hoxA2a	ENSORLP00000033948	ENSORLP00000006289	ENSORLP00000033948	HoxA2a.	Homeobox A5a.	0.471
hoxA2a	LOC101162380	ENSORLP00000006289	ENSORLP00000006355	HoxA2a.	Homeobox A13a.	0.419
hoxA2a	hoxb5	ENSORLP00000006289	ENSORLP00000039816	HoxA2a.	Homeobox B5b.	0.482
hoxa9	hoxb5	ENSORLP00000031973	ENSORLP00000039816	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Homeobox B5b.	0.447
hoxb5	ENSORLP00000033948	ENSORLP00000039816	ENSORLP00000033948	Homeobox B5b.	Homeobox A5a.	0.491
hoxb5	hoxA2a	ENSORLP00000039816	ENSORLP00000006289	Homeobox B5b.	HoxA2a.	0.482
hoxb5	hoxa9	ENSORLP00000039816	ENSORLP00000031973	Homeobox B5b.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.447
hoxb5	hoxb9	ENSORLP00000039816	ENSORLP00000021315	Homeobox B5b.	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	0.650
hoxb9	LOC101175240	ENSORLP00000021315	ENSORLP00000021307	Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family.	Homeobox B13a.	0.439