STRINGSTRING
dnd1 dnd1 H3-3B H3-3B H2L503_ORYLA H2L503_ORYLA H2L5K1_ORYLA H2L5K1_ORYLA H2L5L2_ORYLA H2L5L2_ORYLA znf143 znf143 H2L6K8_ORYLA H2L6K8_ORYLA LOC101159638 LOC101159638 sox2 sox2 H2LD49_ORYLA H2LD49_ORYLA nfya nfya gabpa gabpa LOC101168921 LOC101168921 Sox2 Sox2 H3-2 H3-2 piwil2 piwil2 prdm1 prdm1 H2MMA0_ORYLA H2MMA0_ORYLA LOC101167730 LOC101167730 tdrd7 tdrd7 actb actb gapdh gapdh ENSORLP00000041905 ENSORLP00000041905 dazl dazl ENSORLP00000043059 ENSORLP00000043059
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dnd1Dead end protein. (372 aa)
H3-3BHistone H3; Belongs to the histone H3 family. (140 aa)
H2L503_ORYLAHistone H3; Belongs to the histone H3 family. (100 aa)
H2L5K1_ORYLAHistone H3; Belongs to the histone H3 family. (136 aa)
H2L5L2_ORYLAHistone H3; Belongs to the histone H3 family. (125 aa)
znf143Zinc finger protein 143b. (625 aa)
H2L6K8_ORYLAHistone H3; Belongs to the histone H3 family. (107 aa)
LOC101159638Histone H3; Belongs to the histone H3 family. (136 aa)
sox2SOX3 protein. (300 aa)
H2LD49_ORYLAHistone H3; Belongs to the histone H3 family. (134 aa)
nfyaNuclear transcription factor Y, alpha, like. (316 aa)
gabpaGA binding protein transcription factor subunit alpha. (440 aa)
LOC101168921Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA. (410 aa)
Sox2SRY-box transcription factor 2. (243 aa)
H3-2Histone H3; Belongs to the histone H3 family. (139 aa)
piwil2Uncharacterized protein; Belongs to the argonaute family. (1114 aa)
prdm1Prdm1a. (845 aa)
H2MMA0_ORYLATudor domain containing 9. (1043 aa)
LOC101167730Glyceraldehyde-3-phosphate dehydrogenase. (335 aa)
tdrd7Tudor domain containing 7 b. (1136 aa)
actbActin, cytoplasmic 1. (434 aa)
gapdhGlyceraldehyde-3-phosphate dehydrogenase. (333 aa)
ENSORLP00000041905Histone H3; Belongs to the histone H3 family. (101 aa)
dazlRRM domain-containing protein. (217 aa)
ENSORLP00000043059Histone H3; Belongs to the histone H3 family. (132 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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