STRINGSTRING
gapdh gapdh pdx1 pdx1 ing5 ing5 bpgm bpgm PGAM1 PGAM1 uba52 uba52 vwf vwf rpl34 rpl34 LOC101167730 LOC101167730 mstn mstn LOC101164987 LOC101164987
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
gapdhGlyceraldehyde-3-phosphate dehydrogenase. (333 aa)
pdx1Pancreatic and duodenal homeobox 1. (262 aa)
ing5Inhibitor of growth protein. (241 aa)
bpgmPhosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. (258 aa)
PGAM1Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. (254 aa)
uba52Ubiquitin A-52 residue ribosomal protein fusion product 1. (128 aa)
vwfVon Willebrand factor. (2849 aa)
rpl34Ribosomal protein L34. (130 aa)
LOC101167730Glyceraldehyde-3-phosphate dehydrogenase. (335 aa)
mstnTGF_BETA_2 domain-containing protein. (424 aa)
LOC101164987Phosphoglycerate mutase; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. (255 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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