(9 nodes) (2018) Making Thymus Visible: Understanding T-Cell Development from a New Perspective. network (Oryzias latipes)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101166911	Chemokine (C-C motif) receptor 9b; Belongs to the G-protein coupled receptor 1 family. (364 aa)
	a-sdf1a	Chemokine (C-X-C motif) ligand 12a; Belongs to the intercrine alpha (chemokine CxC) family. (98 aa)
	LOC101155571-4	Histone H2B 1/2. (124 aa)
	Ccr7	Chemokine (C-C motif) receptor 7; Belongs to the G-protein coupled receptor 1 family. (407 aa)
	rag2	Recombination activating gene 2. (532 aa)
	LOC101155571	Histone H2B; Belongs to the histone H2B family. (124 aa)
	LOC101155571-2	Histone H2B 1/2. (124 aa)
	LOC100049444	C-X-C motif chemokine receptor 4; Belongs to the G-protein coupled receptor 1 family. (375 aa)
	LOC101155571-3	Histone H2B 1/2. (124 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ccr7	LOC100049444	ENSORLP00000003262	ENSORLP00000033258	Chemokine (C-C motif) receptor 7; Belongs to the G-protein coupled receptor 1 family.	C-X-C motif chemokine receptor 4; Belongs to the G-protein coupled receptor 1 family.	0.503
Ccr7	a-sdf1a	ENSORLP00000003262	ENSORLP00000042279	Chemokine (C-C motif) receptor 7; Belongs to the G-protein coupled receptor 1 family.	Chemokine (C-X-C motif) ligand 12a; Belongs to the intercrine alpha (chemokine CxC) family.	0.704
LOC100049444	Ccr7	ENSORLP00000033258	ENSORLP00000003262	C-X-C motif chemokine receptor 4; Belongs to the G-protein coupled receptor 1 family.	Chemokine (C-C motif) receptor 7; Belongs to the G-protein coupled receptor 1 family.	0.503
LOC100049444	LOC101166911	ENSORLP00000033258	ENSORLP00000039445	C-X-C motif chemokine receptor 4; Belongs to the G-protein coupled receptor 1 family.	Chemokine (C-C motif) receptor 9b; Belongs to the G-protein coupled receptor 1 family.	0.526
LOC100049444	a-sdf1a	ENSORLP00000033258	ENSORLP00000042279	C-X-C motif chemokine receptor 4; Belongs to the G-protein coupled receptor 1 family.	Chemokine (C-X-C motif) ligand 12a; Belongs to the intercrine alpha (chemokine CxC) family.	0.993
LOC101166911	LOC100049444	ENSORLP00000039445	ENSORLP00000033258	Chemokine (C-C motif) receptor 9b; Belongs to the G-protein coupled receptor 1 family.	C-X-C motif chemokine receptor 4; Belongs to the G-protein coupled receptor 1 family.	0.526
LOC101166911	a-sdf1a	ENSORLP00000039445	ENSORLP00000042279	Chemokine (C-C motif) receptor 9b; Belongs to the G-protein coupled receptor 1 family.	Chemokine (C-X-C motif) ligand 12a; Belongs to the intercrine alpha (chemokine CxC) family.	0.696
LOC101166911	rag2	ENSORLP00000039445	ENSORLP00000015003	Chemokine (C-C motif) receptor 9b; Belongs to the G-protein coupled receptor 1 family.	Recombination activating gene 2.	0.601
a-sdf1a	Ccr7	ENSORLP00000042279	ENSORLP00000003262	Chemokine (C-X-C motif) ligand 12a; Belongs to the intercrine alpha (chemokine CxC) family.	Chemokine (C-C motif) receptor 7; Belongs to the G-protein coupled receptor 1 family.	0.704
a-sdf1a	LOC100049444	ENSORLP00000042279	ENSORLP00000033258	Chemokine (C-X-C motif) ligand 12a; Belongs to the intercrine alpha (chemokine CxC) family.	C-X-C motif chemokine receptor 4; Belongs to the G-protein coupled receptor 1 family.	0.993
a-sdf1a	LOC101166911	ENSORLP00000042279	ENSORLP00000039445	Chemokine (C-X-C motif) ligand 12a; Belongs to the intercrine alpha (chemokine CxC) family.	Chemokine (C-C motif) receptor 9b; Belongs to the G-protein coupled receptor 1 family.	0.696
rag2	LOC101166911	ENSORLP00000015003	ENSORLP00000039445	Recombination activating gene 2.	Chemokine (C-C motif) receptor 9b; Belongs to the G-protein coupled receptor 1 family.	0.601