9 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SRC	Tyrosine-protein kinase. (544 aa)
	rho	Rhodopsin; Photoreceptor required for image-forming vision at low light intensity. While most salt water fish species use retinal as chromophore, most freshwater fish use 3-dehydroretinal, or a mixture of retinal and 3-dehydroretinal. Light-induced isomerization of 11-cis to all-trans retinal triggers a conformational change that activates signaling via G-proteins. Subsequent receptor phosphorylation mediates displacement of the bound G-protein alpha subunit by arrestin and terminates signaling (By similarity). (354 aa)
	RHO	Rhodopsin. (352 aa)
	MYH6	Myosin_tail_1 domain-containing protein. (965 aa)
	LOC101157922	Rhodopsin. (366 aa)
	LOC101164480	Tyrosine-protein kinase. (551 aa)
	kfh-g	Green-sensitive opsin; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily. (351 aa)
	LOC101158336	Rhodopsin. (367 aa)
	enc1	Ectodermal-neural cortex 1. (591 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101164480	RHO	ENSORLP00000036233	ENSORLP00000013767	Tyrosine-protein kinase.	Rhodopsin.	0.411
LOC101164480	SRC	ENSORLP00000036233	ENSORLP00000008431	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.900
LOC101164480	enc1	ENSORLP00000036233	ENSORLP00000004087	Tyrosine-protein kinase.	Ectodermal-neural cortex 1.	0.618
LOC101164480	kfh-g	ENSORLP00000036233	ENSORLP00000037458	Tyrosine-protein kinase.	Green-sensitive opsin; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.	0.411
LOC101164480	rho	ENSORLP00000036233	ENSORLP00000013288	Tyrosine-protein kinase.	Rhodopsin; Photoreceptor required for image-forming vision at low light intensity. While most salt water fish species use retinal as chromophore, most freshwater fish use 3-dehydroretinal, or a mixture of retinal and 3-dehydroretinal. Light-induced isomerization of 11-cis to all-trans retinal triggers a conformational change that activates signaling via G-proteins. Subsequent receptor phosphorylation mediates displacement of the bound G-protein alpha subunit by arrestin and terminates signaling (By similarity).	0.411
MYH6	enc1	ENSORLP00000024094	ENSORLP00000004087	Myosin_tail_1 domain-containing protein.	Ectodermal-neural cortex 1.	0.632
RHO	LOC101164480	ENSORLP00000013767	ENSORLP00000036233	Rhodopsin.	Tyrosine-protein kinase.	0.411
RHO	enc1	ENSORLP00000013767	ENSORLP00000004087	Rhodopsin.	Ectodermal-neural cortex 1.	0.539
SRC	LOC101164480	ENSORLP00000008431	ENSORLP00000036233	Tyrosine-protein kinase.	Tyrosine-protein kinase.	0.900
SRC	enc1	ENSORLP00000008431	ENSORLP00000004087	Tyrosine-protein kinase.	Ectodermal-neural cortex 1.	0.618
SRC	kfh-g	ENSORLP00000008431	ENSORLP00000037458	Tyrosine-protein kinase.	Green-sensitive opsin; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.	0.492
enc1	LOC101164480	ENSORLP00000004087	ENSORLP00000036233	Ectodermal-neural cortex 1.	Tyrosine-protein kinase.	0.618
enc1	MYH6	ENSORLP00000004087	ENSORLP00000024094	Ectodermal-neural cortex 1.	Myosin_tail_1 domain-containing protein.	0.632
enc1	RHO	ENSORLP00000004087	ENSORLP00000013767	Ectodermal-neural cortex 1.	Rhodopsin.	0.539
enc1	SRC	ENSORLP00000004087	ENSORLP00000008431	Ectodermal-neural cortex 1.	Tyrosine-protein kinase.	0.618
enc1	kfh-g	ENSORLP00000004087	ENSORLP00000037458	Ectodermal-neural cortex 1.	Green-sensitive opsin; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.	0.446
enc1	rho	ENSORLP00000004087	ENSORLP00000013288	Ectodermal-neural cortex 1.	Rhodopsin; Photoreceptor required for image-forming vision at low light intensity. While most salt water fish species use retinal as chromophore, most freshwater fish use 3-dehydroretinal, or a mixture of retinal and 3-dehydroretinal. Light-induced isomerization of 11-cis to all-trans retinal triggers a conformational change that activates signaling via G-proteins. Subsequent receptor phosphorylation mediates displacement of the bound G-protein alpha subunit by arrestin and terminates signaling (By similarity).	0.539
kfh-g	LOC101164480	ENSORLP00000037458	ENSORLP00000036233	Green-sensitive opsin; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.	Tyrosine-protein kinase.	0.411
kfh-g	SRC	ENSORLP00000037458	ENSORLP00000008431	Green-sensitive opsin; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.	Tyrosine-protein kinase.	0.492
kfh-g	enc1	ENSORLP00000037458	ENSORLP00000004087	Green-sensitive opsin; Visual pigments are the light-absorbing molecules that mediate vision. They consist of an apoprotein, opsin, covalently linked to cis-retinal; Belongs to the G-protein coupled receptor 1 family. Opsin subfamily.	Ectodermal-neural cortex 1.	0.446