STRINGSTRING
LOC101168881 LOC101168881 twist1-2 twist1-2 LOC101162687 LOC101162687 en2 en2 smo smo pax1 pax1 ENSORLP00000031966 ENSORLP00000031966 sox10 sox10 LOC101163732 LOC101163732 tnmd tnmd pax9 pax9 col1a2 col1a2 Nog Nog gli2 gli2 twist1 twist1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC101168881Thrombospondin 4b. (939 aa)
twist1-2Basic helix-loop-helix transcription factor twist. (168 aa)
LOC101162687Thrombospondin 4a. (931 aa)
en2Homeobox protein engrailed-like. (268 aa)
smoSmoothened, frizzled class receptor; Belongs to the G-protein coupled receptor Fz/Smo family. (828 aa)
pax1Paired-box transcription factor pax1. (356 aa)
ENSORLP00000031966Dystrophin. (620 aa)
sox10SRY-box containing gene 10b. (484 aa)
LOC101163732Microphthalmia-associated transcription factor 2 isoform m. (406 aa)
tnmdTenomodulin. (307 aa)
pax9Paired box 9. (291 aa)
col1a2Collagen, type I, alpha 2. (1356 aa)
NogNoggin; Belongs to the noggin family. (229 aa)
gli2GLI family zinc finger 2b. (1358 aa)
twist1Twist family bHLH transcription factor 1a. (185 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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