29 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rbp4	Retinol binding protein 4, plasma; Belongs to the calycin superfamily. Lipocalin family. (206 aa)
	LOC101168921	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA. (410 aa)
	LOC100049233	Androgen receptor beta subtype. (744 aa)
	LOC101174135	Uncharacterized protein. (989 aa)
	LOC101167610	Low density lipoprotein receptor-related protein 8, apolipoprotein e receptor. (975 aa)
	TSC2	TSC complex subunit 2. (1608 aa)
	LOC101158704	Cytochrome P450, family 1, subfamily D, polypeptide 1; Belongs to the cytochrome P450 family. (543 aa)
	cyp1a	Cytochrome P450 1A1; Cytochromes P450 are a group of heme-thiolate monooxygenases. They oxidize a variety of structurally unrelated compounds, including steroids, fatty acids, and xenobiotics. (521 aa)
	LOC101169721	Apolipoprotein A-Ib. (323 aa)
	LOC101170061	Uncharacterized protein. (866 aa)
	LOC101170311	Uncharacterized protein. (723 aa)
	lrp1b	Low density lipoprotein receptor-related protein 1Bb. (4445 aa)
	LOC101168764	Tyrosine-protein kinase receptor. (1375 aa)
	dmy	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription. (283 aa)
	LOC101167730	Glyceraldehyde-3-phosphate dehydrogenase. (335 aa)
	actb	Actin, cytoplasmic 1. (434 aa)
	LOC101166254	Tyrosine-protein kinase receptor. (1387 aa)
	Tsc2	DUF3384 domain-containing protein. (164 aa)
	LOC101161189	Uncharacterized protein. (274 aa)
	esr1	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues. (634 aa)
	gapdh	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	rsad2	Radical S-adenosyl methionine domain containing 2. (352 aa)
	LOC101161140	Vitellogenin 3, phosvitinless. (1267 aa)
	LOC101161439	Uncharacterized protein. (272 aa)
	LOC101174729	Aryl hydrocarbon receptor 2. (904 aa)
	ahr	Uncharacterized protein. (879 aa)
	rps18	Ribosomal protein S18. (214 aa)
	LOC101163430	Interferon regulatory factor. (293 aa)
	hdlbp	High density lipoprotein binding protein a. (1283 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100049233	LOC101161140	ENSORLP00000011941	ENSORLP00000037370	Androgen receptor beta subtype.	Vitellogenin 3, phosvitinless.	0.527
LOC100049233	LOC101170061	ENSORLP00000011941	ENSORLP00000022790	Androgen receptor beta subtype.	Uncharacterized protein.	0.411
LOC100049233	dmy	ENSORLP00000011941	ENSORLP00000025381	Androgen receptor beta subtype.	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription.	0.568
LOC100049233	esr1	ENSORLP00000011941	ENSORLP00000042539	Androgen receptor beta subtype.	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues.	0.647
LOC101158704	LOC101170061	ENSORLP00000015460	ENSORLP00000022790	Cytochrome P450, family 1, subfamily D, polypeptide 1; Belongs to the cytochrome P450 family.	Uncharacterized protein.	0.427
LOC101158704	LOC101174729	ENSORLP00000015460	ENSORLP00000000166	Cytochrome P450, family 1, subfamily D, polypeptide 1; Belongs to the cytochrome P450 family.	Aryl hydrocarbon receptor 2.	0.704
LOC101161140	LOC100049233	ENSORLP00000037370	ENSORLP00000011941	Vitellogenin 3, phosvitinless.	Androgen receptor beta subtype.	0.527
LOC101161140	LOC101161189	ENSORLP00000037370	ENSORLP00000042776	Vitellogenin 3, phosvitinless.	Uncharacterized protein.	0.702
LOC101161140	LOC101161439	ENSORLP00000037370	ENSORLP00000043682	Vitellogenin 3, phosvitinless.	Uncharacterized protein.	0.702
LOC101161140	LOC101169721	ENSORLP00000037370	ENSORLP00000019715	Vitellogenin 3, phosvitinless.	Apolipoprotein A-Ib.	0.702
LOC101161140	LOC101174135	ENSORLP00000037370	ENSORLP00000013029	Vitellogenin 3, phosvitinless.	Uncharacterized protein.	0.403
LOC101161140	cyp1a	ENSORLP00000037370	ENSORLP00000018073	Vitellogenin 3, phosvitinless.	Cytochrome P450 1A1; Cytochromes P450 are a group of heme-thiolate monooxygenases. They oxidize a variety of structurally unrelated compounds, including steroids, fatty acids, and xenobiotics.	0.510
LOC101161140	dmy	ENSORLP00000037370	ENSORLP00000025381	Vitellogenin 3, phosvitinless.	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription.	0.420
LOC101161140	esr1	ENSORLP00000037370	ENSORLP00000042539	Vitellogenin 3, phosvitinless.	Estrogen receptor; The steroid hormones and their receptors are involved in the regulation of eukaryotic gene expression and affect cellular proliferation and differentiation in target tissues.	0.837
LOC101161189	LOC101161140	ENSORLP00000042776	ENSORLP00000037370	Uncharacterized protein.	Vitellogenin 3, phosvitinless.	0.702
LOC101161189	LOC101169721	ENSORLP00000042776	ENSORLP00000019715	Uncharacterized protein.	Apolipoprotein A-Ib.	0.701
LOC101161189	hdlbp	ENSORLP00000042776	ENSORLP00000002774	Uncharacterized protein.	High density lipoprotein binding protein a.	0.521
LOC101161439	LOC101161140	ENSORLP00000043682	ENSORLP00000037370	Uncharacterized protein.	Vitellogenin 3, phosvitinless.	0.702
LOC101161439	LOC101169721	ENSORLP00000043682	ENSORLP00000019715	Uncharacterized protein.	Apolipoprotein A-Ib.	0.717
LOC101161439	hdlbp	ENSORLP00000043682	ENSORLP00000002774	Uncharacterized protein.	High density lipoprotein binding protein a.	0.521