STRINGSTRING
wnt3a wnt3a mansc1-2 mansc1-2 gbx2 gbx2 ezh2 ezh2 LOC111949309 LOC111949309 sost sost LOC101163589 LOC101163589 LOC100125516 LOC100125516 hand2 hand2 wnt10b wnt10b dlx2 dlx2 dhrs3 dhrs3 entpd5 entpd5 LOC100529192 LOC100529192 sox1 sox1 Sox2 Sox2 LOC101172782 LOC101172782 LOC100049282 LOC100049282 ephb4 ephb4 shh shh fgf20a fgf20a fgf8 fgf8 fgf4 fgf4 fgf3 fgf3 sox2 sox2 fst fst cyp26b1 cyp26b1 LOC101160196 LOC101160196 evx1 evx1 col2a1a col2a1a LOC101164656 LOC101164656 eomes eomes SEMA4D SEMA4D TBX6 TBX6 stra6 stra6 rdh10 rdh10 nck1 nck1 lhx6 lhx6 runx2 runx2 LOC101158631 LOC101158631 fgf10 fgf10 nck2 nck2 sema3a sema3a
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
wnt3aProtein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (355 aa)
mansc1-2Parathyroid hormone-like hormone a. (202 aa)
gbx2Gastrulation brain homeobox 2. (350 aa)
ezh2Uncharacterized protein. (775 aa)
LOC111949309HMG box domain-containing protein. (338 aa)
sostSclerostin. (219 aa)
LOC101163589Cellular retinoic acid binding protein 2, b; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (142 aa)
LOC100125516Retinoic acid receptor, gamma b. (530 aa)
hand2Heart and neural crest derivatives expressed 2. (232 aa)
wnt10bProtein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (429 aa)
dlx2Homeobox domain-containing protein. (277 aa)
dhrs3Dehydrogenase/reductase (SDR family) member 3b; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (318 aa)
entpd5Ectonucleoside triphosphate diphosphohydrolase 5a; Belongs to the GDA1/CD39 NTPase family. (560 aa)
LOC100529192Collagen, type II, alpha 1a. (1489 aa)
sox1HMG box domain-containing protein. (322 aa)
Sox2SRY-box transcription factor 2. (243 aa)
LOC101172782Ripply transcriptional repressor 2. (122 aa)
LOC100049282Retinoic acid receptor, alpha a. (455 aa)
ephb4Eph receptor B4a. (985 aa)
shhHedgehog protein; Intercellular signal essential for a variety of patterning events during development. (414 aa)
fgf20aFibroblast growth factor; Belongs to the heparin-binding growth factors family. (252 aa)
fgf8Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (214 aa)
fgf4Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (188 aa)
fgf3Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (245 aa)
sox2SOX3 protein. (300 aa)
fstFollistatin a. (321 aa)
cyp26b1Cytochrome P450 26B1; Belongs to the cytochrome P450 family. (512 aa)
LOC101160196Ephrin-B3a; Belongs to the ephrin family. (340 aa)
evx1Even-skipped homeobox 1. (375 aa)
col2a1aType II collagen A isoform 1. (1491 aa)
LOC101164656Procollagen, type IX, alpha 2. (583 aa)
eomesEomesodermin homolog b. (594 aa)
SEMA4DSemaphorin 4D; Belongs to the semaphorin family. (903 aa)
TBX6T-box transcription factor 6. (242 aa)
stra6Stimulated by retinoic acid 6. (665 aa)
rdh10Retinol dehydrogenase 10a; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (340 aa)
nck1Cytoplasmic protein. (392 aa)
lhx6LIM homeobox 6. (350 aa)
runx2Runt-related transcription factor. (461 aa)
LOC101158631Cellular retinoic acid binding protein 2, a; Belongs to the calycin superfamily. Fatty-acid binding protein (FABP) family. (142 aa)
fgf10Fibroblast growth factor; Belongs to the heparin-binding growth factors family. (250 aa)
nck2Cytoplasmic protein. (398 aa)
sema3aSema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family. (796 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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