24 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gapdh	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	LOC101166143	Growth differentiation factor 9. (435 aa)
	gsdf	Gonadal soma derived factor. (216 aa)
	sox9	HMG box domain-containing protein. (476 aa)
	bmp15	Bone morphogenetic protein 15. (444 aa)
	LOC101168921	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA. (410 aa)
	nanos3	NANOS3; Belongs to the nanos family. (201 aa)
	wt1	Uncharacterized protein. (435 aa)
	prl	Prolactin 2. (227 aa)
	gnrh1	GnRH-associated peptide 1; Stimulates the secretion of gonadotropins. Belongs to the GnRH family. (91 aa)
	cxcl12	Chemokine (C-X-C motif) ligand 12b; Belongs to the intercrine alpha (chemokine CxC) family. (102 aa)
	figla	BHLH domain-containing protein. (200 aa)
	six1	SIX homeobox 1a. (284 aa)
	LOC101172582	Prolactin. (237 aa)
	foxl2	Forkhead box L2. (306 aa)
	dmy	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription. (283 aa)
	LOC101167730	Glyceraldehyde-3-phosphate dehydrogenase. (335 aa)
	dnd1	Dead end protein. (372 aa)
	actb	Actin, cytoplasmic 1. (434 aa)
	pgr	Uncharacterized protein. (667 aa)
	zar1	Zygote arrest 1. (373 aa)
	gsr	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. (496 aa)
	LOC101174651	Aromatase; Catalyzes the formation of aromatic C18 estrogens from C19 androgens. (518 aa)
	cyp19b	Aromatase B; Belongs to the cytochrome P450 family. (499 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101166143	LOC101174651	ENSORLP00000042760	ENSORLP00000003688	Growth differentiation factor 9.	Aromatase; Catalyzes the formation of aromatic C18 estrogens from C19 androgens.	0.671
LOC101166143	bmp15	ENSORLP00000042760	ENSORLP00000010817	Growth differentiation factor 9.	Bone morphogenetic protein 15.	0.823
LOC101166143	cyp19b	ENSORLP00000042760	ENSORLP00000006985	Growth differentiation factor 9.	Aromatase B; Belongs to the cytochrome P450 family.	0.569
LOC101166143	dmy	ENSORLP00000042760	ENSORLP00000025381	Growth differentiation factor 9.	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription.	0.559
LOC101166143	dnd1	ENSORLP00000042760	ENSORLP00000029898	Growth differentiation factor 9.	Dead end protein.	0.451
LOC101166143	figla	ENSORLP00000042760	ENSORLP00000019345	Growth differentiation factor 9.	BHLH domain-containing protein.	0.770
LOC101166143	foxl2	ENSORLP00000042760	ENSORLP00000025058	Growth differentiation factor 9.	Forkhead box L2.	0.630
LOC101166143	gsdf	ENSORLP00000042760	ENSORLP00000042059	Growth differentiation factor 9.	Gonadal soma derived factor.	0.533
LOC101166143	sox9	ENSORLP00000042760	ENSORLP00000009985	Growth differentiation factor 9.	HMG box domain-containing protein.	0.503
LOC101166143	zar1	ENSORLP00000042760	ENSORLP00000038640	Growth differentiation factor 9.	Zygote arrest 1.	0.636
LOC101167730	LOC101168921	ENSORLP00000028200	ENSORLP00000011676	Glyceraldehyde-3-phosphate dehydrogenase.	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	0.672
LOC101167730	actb	ENSORLP00000028200	ENSORLP00000031145	Glyceraldehyde-3-phosphate dehydrogenase.	Actin, cytoplasmic 1.	0.672
LOC101167730	gapdh	ENSORLP00000028200	ENSORLP00000038395	Glyceraldehyde-3-phosphate dehydrogenase.	Glyceraldehyde-3-phosphate dehydrogenase.	0.934
LOC101167730	gsr	ENSORLP00000028200	ENSORLP00000000771	Glyceraldehyde-3-phosphate dehydrogenase.	Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.	0.598
LOC101168921	LOC101167730	ENSORLP00000011676	ENSORLP00000028200	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	Glyceraldehyde-3-phosphate dehydrogenase.	0.672
LOC101168921	LOC101174651	ENSORLP00000011676	ENSORLP00000003688	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	Aromatase; Catalyzes the formation of aromatic C18 estrogens from C19 androgens.	0.461
LOC101168921	dmy	ENSORLP00000011676	ENSORLP00000025381	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription.	0.510
LOC101168921	gapdh	ENSORLP00000011676	ENSORLP00000038395	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	Glyceraldehyde-3-phosphate dehydrogenase.	0.841
LOC101168921	sox9	ENSORLP00000011676	ENSORLP00000009985	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	HMG box domain-containing protein.	0.416
LOC101172582	LOC101174651	ENSORLP00000021175	ENSORLP00000003688	Prolactin.	Aromatase; Catalyzes the formation of aromatic C18 estrogens from C19 androgens.	0.416