STRINGSTRING
cnot3 cnot3 ENSORLP00000035584 ENSORLP00000035584 LOC101165077 LOC101165077 ENO2 ENO2 ptp4a1 ptp4a1 LOC101172830 LOC101172830 HOXA7 HOXA7 LOC101164660 LOC101164660 LOC101168921 LOC101168921 bhlhe41 bhlhe41 tfe3 tfe3 tcf15 tcf15 usf2 usf2 usf1 usf1 slc25a14 slc25a14 LOC101167730 LOC101167730 actb actb hoxa9 hoxa9 LOC101170239 LOC101170239 gapdh gapdh
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cnot3CCR4-NOT transcription complex, subunit 3a. (963 aa)
ENSORLP00000035584Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
LOC101165077Enolase 2. (434 aa)
ENO2Enolase 2. (475 aa)
ptp4a1Protein tyrosine phosphatase 4A1. (173 aa)
LOC101172830Homeobox A4. (249 aa)
HOXA7Homeobox A7. (235 aa)
LOC101164660Upstream transcription factor 2, c-fos interacting. (305 aa)
LOC101168921Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA. (410 aa)
bhlhe41BHLH protein DEC2. (419 aa)
tfe3Transcription factor binding to IGHM enhancer 3b. (512 aa)
tcf15Transcription factor 15. (178 aa)
usf2BHLH domain-containing protein. (325 aa)
usf1Upstream transcription factor 1. (346 aa)
slc25a14Solute carrier family 25 member 14; Belongs to the mitochondrial carrier (TC 2.A.29) family. (286 aa)
LOC101167730Glyceraldehyde-3-phosphate dehydrogenase. (335 aa)
actbActin, cytoplasmic 1. (434 aa)
hoxa9Homeobox protein; Sequence-specific transcription factor which is part of a developmental regulatory system that provides cells with specific positional identities on the anterior-posterior axis. Belongs to the Abd-B homeobox family. (263 aa)
LOC101170239Death effector domain containing. (389 aa)
gapdhGlyceraldehyde-3-phosphate dehydrogenase. (333 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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