19 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	crh	Corticotropin-releasing hormone. (163 aa)
	LOC101167158	Growth hormone secretagogue receptor b; Belongs to the G-protein coupled receptor 1 family. (430 aa)
	NCOA3	Nuclear receptor coactivator. (1496 aa)
	prl	Prolactin 2. (227 aa)
	LOC100049402	Somatolactin; Selectively regulates proliferation and morphogenesis of neural-crest derived pigment cells; Belongs to the somatotropin/prolactin family. (230 aa)
	trh	Uncharacterized protein. (292 aa)
	pomc	Proopiomelanocortin. (212 aa)
	Grp	Uncharacterized protein. (195 aa)
	ghrh	Growth hormone releasing hormone. (141 aa)
	LOC101164777	Uncharacterized protein. (265 aa)
	bche	Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family. (589 aa)
	LOC101172582	Prolactin. (237 aa)
	apln	Apelin. (76 aa)
	myog	Myogenin. (248 aa)
	ghr-2	Uncharacterized protein. (541 aa)
	LOC101156489	Nuclear receptor coactivator 3. (1533 aa)
	LOC101157923	Insulin-like growth factor binding protein 5a. (253 aa)
	CCK	Cholecystokinin. (138 aa)
	LOC101166988	CRF domain-containing protein. (143 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCK	Grp	ENSORLP00000007034	ENSORLP00000037858	Cholecystokinin.	Uncharacterized protein.	0.486
CCK	LOC101164777	ENSORLP00000007034	ENSORLP00000042460	Cholecystokinin.	Uncharacterized protein.	0.573
CCK	LOC101166988	ENSORLP00000007034	ENSORLP00000008562	Cholecystokinin.	CRF domain-containing protein.	0.470
CCK	LOC101167158	ENSORLP00000007034	ENSORLP00000014678	Cholecystokinin.	Growth hormone secretagogue receptor b; Belongs to the G-protein coupled receptor 1 family.	0.490
CCK	apln	ENSORLP00000007034	ENSORLP00000045734	Cholecystokinin.	Apelin.	0.513
CCK	crh	ENSORLP00000007034	ENSORLP00000010676	Cholecystokinin.	Corticotropin-releasing hormone.	0.470
CCK	ghrh	ENSORLP00000007034	ENSORLP00000028148	Cholecystokinin.	Growth hormone releasing hormone.	0.440
CCK	pomc	ENSORLP00000007034	ENSORLP00000032793	Cholecystokinin.	Proopiomelanocortin.	0.572
CCK	trh	ENSORLP00000007034	ENSORLP00000028311	Cholecystokinin.	Uncharacterized protein.	0.547
Grp	CCK	ENSORLP00000037858	ENSORLP00000007034	Uncharacterized protein.	Cholecystokinin.	0.486
Grp	trh	ENSORLP00000037858	ENSORLP00000028311	Uncharacterized protein.	Uncharacterized protein.	0.542
LOC100049402	LOC101164777	ENSORLP00000016881	ENSORLP00000042460	Somatolactin; Selectively regulates proliferation and morphogenesis of neural-crest derived pigment cells; Belongs to the somatotropin/prolactin family.	Uncharacterized protein.	0.780
LOC100049402	LOC101172582	ENSORLP00000016881	ENSORLP00000021175	Somatolactin; Selectively regulates proliferation and morphogenesis of neural-crest derived pigment cells; Belongs to the somatotropin/prolactin family.	Prolactin.	0.801
LOC100049402	ghr-2	ENSORLP00000016881	ENSORLP00000018551	Somatolactin; Selectively regulates proliferation and morphogenesis of neural-crest derived pigment cells; Belongs to the somatotropin/prolactin family.	Uncharacterized protein.	0.982
LOC100049402	ghrh	ENSORLP00000016881	ENSORLP00000028148	Somatolactin; Selectively regulates proliferation and morphogenesis of neural-crest derived pigment cells; Belongs to the somatotropin/prolactin family.	Growth hormone releasing hormone.	0.827
LOC100049402	pomc	ENSORLP00000016881	ENSORLP00000032793	Somatolactin; Selectively regulates proliferation and morphogenesis of neural-crest derived pigment cells; Belongs to the somatotropin/prolactin family.	Proopiomelanocortin.	0.808
LOC100049402	prl	ENSORLP00000016881	ENSORLP00000015801	Somatolactin; Selectively regulates proliferation and morphogenesis of neural-crest derived pigment cells; Belongs to the somatotropin/prolactin family.	Prolactin 2.	0.783
LOC101164777	CCK	ENSORLP00000042460	ENSORLP00000007034	Uncharacterized protein.	Cholecystokinin.	0.573
LOC101164777	LOC100049402	ENSORLP00000042460	ENSORLP00000016881	Uncharacterized protein.	Somatolactin; Selectively regulates proliferation and morphogenesis of neural-crest derived pigment cells; Belongs to the somatotropin/prolactin family.	0.780
LOC101164777	LOC101166988	ENSORLP00000042460	ENSORLP00000008562	Uncharacterized protein.	CRF domain-containing protein.	0.437