(43 nodes) (2023) Comparative gonad transcriptome analysis in cobia (Rachycentron canadum). network (Oryzias latipes)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:
	wnt4b	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (358 aa)
	sox2	SOX3 protein. (300 aa)
	cyp17a2	Cytochrome P450 family 17 polypeptide 2; Belongs to the cytochrome P450 family. (521 aa)
	hsd17b1	Hydroxysteroid (17-beta) dehydrogenase 1. (291 aa)
	amh	Anti-muellerian hormone. (496 aa)
	LOC101157155	Cytochrome P450, family 21, subfamily A, polypeptide 2; Belongs to the cytochrome P450 family. (519 aa)
	sox9	HMG box domain-containing protein. (476 aa)
	sox8	SRY-box containing gene 8. (465 aa)
	bmp15	Bone morphogenetic protein 15. (444 aa)
	LOC101161072	Tektin 1. (393 aa)
	cyp11b	Cytochrome P450 11beta; Belongs to the cytochrome P450 family. (541 aa)
	LOC101168357	BTB domain-containing protein. (576 aa)
	sox17	SRY-box containing gene 17. (398 aa)
	Sox2	SRY-box transcription factor 2. (243 aa)
	wnt4	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (355 aa)
	wt1	Uncharacterized protein. (435 aa)
	spata7	Spermatogenesis associated 7. (582 aa)
	LOC101172064	BTB domain-containing protein. (551 aa)
	piwil2	Uncharacterized protein; Belongs to the argonaute family. (1114 aa)
	cyp1a	Cytochrome P450 1A1; Cytochromes P450 are a group of heme-thiolate monooxygenases. They oxidize a variety of structurally unrelated compounds, including steroids, fatty acids, and xenobiotics. (521 aa)
	cyp26a1	Cytochrome P450 26A1; Belongs to the cytochrome P450 family. (488 aa)
	sox11	Transcription factor SOX. (359 aa)
	LOC101160075	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family. (624 aa)
	figla	BHLH domain-containing protein. (200 aa)
	gata4	GATA binding protein 4. (388 aa)
	foxl2	Forkhead box L2. (306 aa)
	dmy	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription. (283 aa)
	sox7	Uncharacterized protein. (407 aa)
	ENSORLP00000027329	Spermatogenesis associated 6. (407 aa)
	piwil1	Uncharacterized protein; Belongs to the argonaute family. (1185 aa)
	hsd17b10	Hydroxysteroid (17-beta) dehydrogenase 10; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (260 aa)
	wnt5b	Protein Wnt-5b; Ligand for members of the frizzled family of seven transmembrane receptors. Probable developmental protein. May be a signaling molecule which affects the development of discrete regions of tissues. Is likely to signal over only few cell diameters (By similarity). (436 aa)
	ddx4	Uncharacterized protein; Belongs to the DEAD box helicase family. (727 aa)
	sox5	HMG box domain-containing protein. (880 aa)
	dmrta2	Doublesex- and mab-3-related transcription factor A2; May be involved in sexual development; Belongs to the DMRT family. (448 aa)
	wnt1	Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family. (398 aa)
	zar1	Zygote arrest 1. (373 aa)
	wt1-2	Uncharacterized protein. (418 aa)
	nr5a2	Uncharacterized protein. (520 aa)
	gsdf	Gonadal soma derived factor. (216 aa)
	LOC101166143	Growth differentiation factor 9. (435 aa)
	spata17	Spermatogenesis associated 17. (276 aa)
	DDX5	DEAD-box helicase 5; Belongs to the DEAD box helicase family. (631 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX5	LOC101160075	ENSORLP00000045748	ENSORLP00000018923	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	0.901
DDX5	ddx4	ENSORLP00000045748	ENSORLP00000033029	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.480
ENSORLP00000027329	LOC101168357	ENSORLP00000027329	ENSORLP00000013859	Spermatogenesis associated 6.	BTB domain-containing protein.	0.408
ENSORLP00000027329	LOC101172064	ENSORLP00000027329	ENSORLP00000016771	Spermatogenesis associated 6.	BTB domain-containing protein.	0.408
ENSORLP00000027329	spata17	ENSORLP00000027329	ENSORLP00000044696	Spermatogenesis associated 6.	Spermatogenesis associated 17.	0.487
ENSORLP00000027329	spata7	ENSORLP00000027329	ENSORLP00000016223	Spermatogenesis associated 6.	Spermatogenesis associated 7.	0.598
ENSORLP00000027329	zar1	ENSORLP00000027329	ENSORLP00000038640	Spermatogenesis associated 6.	Zygote arrest 1.	0.402
LOC101157155	cyp11b	ENSORLP00000008663	ENSORLP00000013135	Cytochrome P450, family 21, subfamily A, polypeptide 2; Belongs to the cytochrome P450 family.	Cytochrome P450 11beta; Belongs to the cytochrome P450 family.	0.945
LOC101157155	cyp17a2	ENSORLP00000008663	ENSORLP00000002785	Cytochrome P450, family 21, subfamily A, polypeptide 2; Belongs to the cytochrome P450 family.	Cytochrome P450 family 17 polypeptide 2; Belongs to the cytochrome P450 family.	0.914
LOC101157155	dmy	ENSORLP00000008663	ENSORLP00000025381	Cytochrome P450, family 21, subfamily A, polypeptide 2; Belongs to the cytochrome P450 family.	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription.	0.548
LOC101157155	figla	ENSORLP00000008663	ENSORLP00000019345	Cytochrome P450, family 21, subfamily A, polypeptide 2; Belongs to the cytochrome P450 family.	BHLH domain-containing protein.	0.409
LOC101157155	hsd17b1	ENSORLP00000008663	ENSORLP00000005206	Cytochrome P450, family 21, subfamily A, polypeptide 2; Belongs to the cytochrome P450 family.	Hydroxysteroid (17-beta) dehydrogenase 1.	0.628
LOC101157155	hsd17b10	ENSORLP00000008663	ENSORLP00000032665	Cytochrome P450, family 21, subfamily A, polypeptide 2; Belongs to the cytochrome P450 family.	Hydroxysteroid (17-beta) dehydrogenase 10; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.591
LOC101160075	DDX5	ENSORLP00000018923	ENSORLP00000045748	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	0.901
LOC101160075	ddx4	ENSORLP00000018923	ENSORLP00000033029	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.480
LOC101166143	amh	ENSORLP00000042760	ENSORLP00000006358	Growth differentiation factor 9.	Anti-muellerian hormone.	0.736
LOC101166143	bmp15	ENSORLP00000042760	ENSORLP00000010817	Growth differentiation factor 9.	Bone morphogenetic protein 15.	0.823
LOC101166143	dmy	ENSORLP00000042760	ENSORLP00000025381	Growth differentiation factor 9.	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription.	0.559
LOC101166143	figla	ENSORLP00000042760	ENSORLP00000019345	Growth differentiation factor 9.	BHLH domain-containing protein.	0.770
LOC101166143	foxl2	ENSORLP00000042760	ENSORLP00000025058	Growth differentiation factor 9.	Forkhead box L2.	0.630