8 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	actb	Actin, cytoplasmic 1. (434 aa)
	gapdh	Glyceraldehyde-3-phosphate dehydrogenase. (333 aa)
	dmy	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription. (283 aa)
	foxl2	Forkhead box L2. (306 aa)
	pgk1	Phosphoglycerate kinase. (421 aa)
	cish	Cytokine-inducible SH2-containing protein. (226 aa)
	LOC101168921	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA. (410 aa)
	rps18	Ribosomal protein S18. (214 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101168921	dmy	ENSORLP00000011676	ENSORLP00000025381	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription.	0.510
LOC101168921	gapdh	ENSORLP00000011676	ENSORLP00000038395	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	Glyceraldehyde-3-phosphate dehydrogenase.	0.841
LOC101168921	pgk1	ENSORLP00000011676	ENSORLP00000017634	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	Phosphoglycerate kinase.	0.554
actb	dmy	ENSORLP00000031145	ENSORLP00000025381	Actin, cytoplasmic 1.	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription.	0.511
actb	gapdh	ENSORLP00000031145	ENSORLP00000038395	Actin, cytoplasmic 1.	Glyceraldehyde-3-phosphate dehydrogenase.	0.841
actb	pgk1	ENSORLP00000031145	ENSORLP00000017634	Actin, cytoplasmic 1.	Phosphoglycerate kinase.	0.554
dmy	LOC101168921	ENSORLP00000025381	ENSORLP00000011676	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription.	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	0.510
dmy	actb	ENSORLP00000025381	ENSORLP00000031145	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription.	Actin, cytoplasmic 1.	0.511
dmy	foxl2	ENSORLP00000025381	ENSORLP00000025058	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription.	Forkhead box L2.	0.841
dmy	pgk1	ENSORLP00000025381	ENSORLP00000017634	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription.	Phosphoglycerate kinase.	0.410
foxl2	dmy	ENSORLP00000025058	ENSORLP00000025381	Forkhead box L2.	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription.	0.841
gapdh	LOC101168921	ENSORLP00000038395	ENSORLP00000011676	Glyceraldehyde-3-phosphate dehydrogenase.	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	0.841
gapdh	actb	ENSORLP00000038395	ENSORLP00000031145	Glyceraldehyde-3-phosphate dehydrogenase.	Actin, cytoplasmic 1.	0.841
gapdh	pgk1	ENSORLP00000038395	ENSORLP00000017634	Glyceraldehyde-3-phosphate dehydrogenase.	Phosphoglycerate kinase.	0.998
gapdh	rps18	ENSORLP00000038395	ENSORLP00000001372	Glyceraldehyde-3-phosphate dehydrogenase.	Ribosomal protein S18.	0.787
pgk1	LOC101168921	ENSORLP00000017634	ENSORLP00000011676	Phosphoglycerate kinase.	Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.	0.554
pgk1	actb	ENSORLP00000017634	ENSORLP00000031145	Phosphoglycerate kinase.	Actin, cytoplasmic 1.	0.554
pgk1	dmy	ENSORLP00000017634	ENSORLP00000025381	Phosphoglycerate kinase.	Doublesex- and mab-3-related transcription factor 1; Transcription factor that acts both as a transcription.	0.410
pgk1	gapdh	ENSORLP00000017634	ENSORLP00000038395	Phosphoglycerate kinase.	Glyceraldehyde-3-phosphate dehydrogenase.	0.998
pgk1	rps18	ENSORLP00000017634	ENSORLP00000001372	Phosphoglycerate kinase.	Ribosomal protein S18.	0.777