12 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC101174729	Aryl hydrocarbon receptor 2. (904 aa)
	dio2	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine). (277 aa)
	ahr	Uncharacterized protein. (879 aa)
	pxdn	Peroxidasin. (1481 aa)
	crh	Corticotropin-releasing hormone. (163 aa)
	fshr	Thyrotropin receptor; Receptor for the thyroid-stimulating hormone (TSH) or thyrotropin. Also acts as a receptor for the heterodimeric glycoprotein hormone (GPHA2:GPHB5) or thyrostimulin. The activity of this receptor is mediated by G proteins which activate adenylate cyclase. Plays a central role in controlling thyroid cell metabolism. Belongs to the G-protein coupled receptor 1 family. FSH/LSH/TSH subfamily. (687 aa)
	LOC101161140	Vitellogenin 3, phosvitinless. (1267 aa)
	cyp3a	Uncharacterized protein. (500 aa)
	LOC101170311	Uncharacterized protein. (723 aa)
	LOC101170061	Uncharacterized protein. (866 aa)
	sod2	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (226 aa)
	LOC101166988	CRF domain-containing protein. (143 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101166988	crh	ENSORLP00000008562	ENSORLP00000010676	CRF domain-containing protein.	Corticotropin-releasing hormone.	0.906
LOC101170061	LOC101170311	ENSORLP00000022790	ENSORLP00000022794	Uncharacterized protein.	Uncharacterized protein.	0.565
LOC101170061	LOC101174729	ENSORLP00000022790	ENSORLP00000000166	Uncharacterized protein.	Aryl hydrocarbon receptor 2.	0.569
LOC101170061	ahr	ENSORLP00000022790	ENSORLP00000000168	Uncharacterized protein.	Uncharacterized protein.	0.575
LOC101170311	LOC101170061	ENSORLP00000022794	ENSORLP00000022790	Uncharacterized protein.	Uncharacterized protein.	0.565
LOC101170311	LOC101174729	ENSORLP00000022794	ENSORLP00000000166	Uncharacterized protein.	Aryl hydrocarbon receptor 2.	0.565
LOC101170311	ahr	ENSORLP00000022794	ENSORLP00000000168	Uncharacterized protein.	Uncharacterized protein.	0.551
LOC101174729	LOC101170061	ENSORLP00000000166	ENSORLP00000022790	Aryl hydrocarbon receptor 2.	Uncharacterized protein.	0.569
LOC101174729	LOC101170311	ENSORLP00000000166	ENSORLP00000022794	Aryl hydrocarbon receptor 2.	Uncharacterized protein.	0.565
LOC101174729	ahr	ENSORLP00000000166	ENSORLP00000000168	Aryl hydrocarbon receptor 2.	Uncharacterized protein.	0.572
ahr	LOC101170061	ENSORLP00000000168	ENSORLP00000022790	Uncharacterized protein.	Uncharacterized protein.	0.575
ahr	LOC101170311	ENSORLP00000000168	ENSORLP00000022794	Uncharacterized protein.	Uncharacterized protein.	0.551
ahr	LOC101174729	ENSORLP00000000168	ENSORLP00000000166	Uncharacterized protein.	Aryl hydrocarbon receptor 2.	0.572
crh	LOC101166988	ENSORLP00000010676	ENSORLP00000008562	Corticotropin-releasing hormone.	CRF domain-containing protein.	0.906
dio2	fshr	ENSORLP00000013567	ENSORLP00000039837	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).	Thyrotropin receptor; Receptor for the thyroid-stimulating hormone (TSH) or thyrotropin. Also acts as a receptor for the heterodimeric glycoprotein hormone (GPHA2:GPHB5) or thyrostimulin. The activity of this receptor is mediated by G proteins which activate adenylate cyclase. Plays a central role in controlling thyroid cell metabolism. Belongs to the G-protein coupled receptor 1 family. FSH/LSH/TSH subfamily.	0.495
fshr	dio2	ENSORLP00000039837	ENSORLP00000013567	Thyrotropin receptor; Receptor for the thyroid-stimulating hormone (TSH) or thyrotropin. Also acts as a receptor for the heterodimeric glycoprotein hormone (GPHA2:GPHB5) or thyrostimulin. The activity of this receptor is mediated by G proteins which activate adenylate cyclase. Plays a central role in controlling thyroid cell metabolism. Belongs to the G-protein coupled receptor 1 family. FSH/LSH/TSH subfamily.	Iodothyronine deiodinase; Responsible for the deiodination of T4 (3,5,3',5'- tetraiodothyronine).	0.495