51 items (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	met	MET proto-oncogene, receptor tyrosine kinase. (1403 aa)
	sema3g	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl; Belongs to the semaphorin family. (776 aa)
	sema6a	Sema domain-containing protein; Belongs to the semaphorin family. (1023 aa)
	LOC101175393	Macrophage stimulating 1 receptor a. (1366 aa)
	SEMA4D	Semaphorin 4D; Belongs to the semaphorin family. (903 aa)
	SEMA4F	Ssemaphorin 4F; Belongs to the semaphorin family. (841 aa)
	LOC101155173	Sema domain-containing protein. (1089 aa)
	sema7a	Semaphorin 7A; Belongs to the semaphorin family. (525 aa)
	PLXNA2	Plexin A2. (1911 aa)
	sema3e	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E; Belongs to the semaphorin family. (791 aa)
	LOC101159664	Plexin b1b. (2110 aa)
	PLXND1	Plexin D1. (1918 aa)
	sema4g	Uncharacterized protein; Belongs to the semaphorin family. (884 aa)
	plxna4	Plexin A4. (1917 aa)
	LOC101164044	Uncharacterized protein; Belongs to the semaphorin family. (665 aa)
	LOC101169812	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Ba; Belongs to the semaphorin family. (901 aa)
	LOC101170303	Semaphorin 4e; Belongs to the semaphorin family. (768 aa)
	LOC100049292	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family. (859 aa)
	LOC101161968	Si:ch211-129c21.1; Belongs to the semaphorin family. (803 aa)
	LOC101158766	Plexin A2. (1962 aa)
	LOC101173050	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb; Belongs to the semaphorin family. (882 aa)
	LOC105356063	Uncharacterized protein; Belongs to the semaphorin family. (764 aa)
	LOC101162124	Plexin b1a. (2215 aa)
	H2MRA1_ORYLA	Sema domain-containing protein. (477 aa)
	LOC101165957	Plexin B3. (1891 aa)
	LOC101159406	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa; Belongs to the semaphorin family. (789 aa)
	LOC101156117	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6E; Belongs to the semaphorin family. (1085 aa)
	sema6d	Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D, like; Belongs to the semaphorin family. (1103 aa)
	LOC101167868	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3H; Belongs to the semaphorin family. (759 aa)
	LOC101160329	Sema domain-containing protein; Belongs to the semaphorin family. (1157 aa)
	LOC101159436	Sema domain-containing protein; Belongs to the semaphorin family. (832 aa)
	LOC101171477	Uncharacterized protein; Belongs to the semaphorin family. (638 aa)
	LOC101155634	Si:ch211-113g11.6; Belongs to the semaphorin family. (637 aa)
	LOC101166949	Sema domain-containing protein; Belongs to the semaphorin family. (837 aa)
	LOC101175150	Sema domain-containing protein. (1934 aa)
	mst1r	Macrophage stimulating 1 receptor b. (1372 aa)
	plxna3	Plexin A3. (1895 aa)
	LOC101160158	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb; Belongs to the semaphorin family. (796 aa)
	LOC101166872	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ga; Belongs to the semaphorin family. (742 aa)
	sema3a	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Ab; Belongs to the semaphorin family. (796 aa)
	sema5b	Sema domain-containing protein. (1139 aa)
	sema3c	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C; Belongs to the semaphorin family. (763 aa)
	LOC101171739	Si:dkey-49n23.1; Belongs to the semaphorin family. (808 aa)
	LOC101169201	Plexin b2b. (1842 aa)
	sema3b	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B; Belongs to the semaphorin family. (805 aa)
	LOC101174516	Sema domain-containing protein; Belongs to the semaphorin family. (772 aa)
	sema5a	Sema domain-containing protein. (1078 aa)
	sema4c	Uncharacterized protein; Belongs to the semaphorin family. (864 aa)
	SEMA4G	Semaphorin 4G; Belongs to the semaphorin family. (905 aa)
	sema3d	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D; Belongs to the semaphorin family. (792 aa)
	LOC101175236	Plexin A1a. (1891 aa)

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
H2MRA1_ORYLA	LOC101167868	ENSORLP00000021280	ENSORLP00000031787	Sema domain-containing protein.	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3H; Belongs to the semaphorin family.	0.422
H2MRA1_ORYLA	LOC101174516	ENSORLP00000021280	ENSORLP00000040954	Sema domain-containing protein.	Sema domain-containing protein; Belongs to the semaphorin family.	0.441
LOC100049292	LOC101158766	ENSORLP00000018857	ENSORLP00000019757	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	Plexin A2.	0.513
LOC100049292	LOC101159664	ENSORLP00000018857	ENSORLP00000012643	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	Plexin b1b.	0.471
LOC100049292	LOC101162124	ENSORLP00000018857	ENSORLP00000001602	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	Plexin b1a.	0.471
LOC100049292	LOC101165957	ENSORLP00000018857	ENSORLP00000026052	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	Plexin B3.	0.471
LOC100049292	LOC101169201	ENSORLP00000018857	ENSORLP00000003520	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	Plexin b2b.	0.471
LOC100049292	LOC101175150	ENSORLP00000018857	ENSORLP00000034248	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	Sema domain-containing protein.	0.622
LOC100049292	LOC101175236	ENSORLP00000018857	ENSORLP00000045602	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	Plexin A1a.	0.622
LOC100049292	LOC101175393	ENSORLP00000018857	ENSORLP00000004366	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	Macrophage stimulating 1 receptor a.	0.612
LOC100049292	PLXNA2	ENSORLP00000018857	ENSORLP00000009631	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	Plexin A2.	0.513
LOC100049292	PLXND1	ENSORLP00000018857	ENSORLP00000013758	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	Plexin D1.	0.513
LOC100049292	met	ENSORLP00000018857	ENSORLP00000024532	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	MET proto-oncogene, receptor tyrosine kinase.	0.612
LOC100049292	mst1r	ENSORLP00000018857	ENSORLP00000034975	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	Macrophage stimulating 1 receptor b.	0.612
LOC100049292	plxna3	ENSORLP00000018857	ENSORLP00000036258	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	Plexin A3.	0.622
LOC100049292	plxna4	ENSORLP00000018857	ENSORLP00000018151	Sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa; Belongs to the semaphorin family.	Plexin A4.	0.513
LOC101155173	LOC101158766	ENSORLP00000008277	ENSORLP00000019757	Sema domain-containing protein.	Plexin A2.	0.440
LOC101155173	LOC101159664	ENSORLP00000008277	ENSORLP00000012643	Sema domain-containing protein.	Plexin b1b.	0.598
LOC101155173	LOC101162124	ENSORLP00000008277	ENSORLP00000001602	Sema domain-containing protein.	Plexin b1a.	0.598
LOC101155173	LOC101165957	ENSORLP00000008277	ENSORLP00000026052	Sema domain-containing protein.	Plexin B3.	0.598