STRINGSTRING
LOC101167684 LOC101167684 LOC101163644 LOC101163644 LOC101175126 LOC101175126 LOC101155859 LOC101155859 utp15 utp15 nxf1 nxf1 eif6 eif6 nop58 nop58 ran ran tefm tefm Pop7 Pop7 imp3 imp3 nat10 nat10 LOC101158762 LOC101158762 rexo2 rexo2 mphosph10 mphosph10 gtpbp4 gtpbp4 nmd3 nmd3 LOC101156432 LOC101156432 LOC101175345 LOC101175345 riok1 riok1 riok2 riok2 rexo1 rexo1 rpp38 rpp38 rbm28 rbm28 REXO5 REXO5 nol6 nol6 rcl1 rcl1 emg1 emg1 H2MDZ5_ORYLA H2MDZ5_ORYLA gnl2 gnl2 pop5 pop5 rrp7a rrp7a utp4 utp4 wdr75 wdr75 gnl3 gnl3 fcf1 fcf1 imp4 imp4 H2MR55_ORYLA H2MR55_ORYLA xrn2 xrn2 ak6 ak6 wdr43 wdr43 dkc1 dkc1 utp18 utp18 wdr36 wdr36 pop4 pop4 EFL1 EFL1 gar1 gar1 nvl nvl bms1 bms1 nhp2 nhp2 nob1 nob1 nxt2 nxt2 drosha drosha ENSORLP00000033233 ENSORLP00000033233 snu13 snu13 Heatr1 Heatr1 sbds sbds pop1 pop1 LOC101170539 LOC101170539 nop56 nop56 tbl3 tbl3 xrn1 xrn1 Wdr3 Wdr3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
LOC101167684PWP2 small subunit processome component. (909 aa)
LOC101163644Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily. (388 aa)
LOC101175126Exportin 1 (CRM1 homolog, yeast) a. (1066 aa)
LOC101155859Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (215 aa)
utp15UTP15 small subunit processome component. (528 aa)
nxf1Zgc:153681. (665 aa)
eif6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (246 aa)
nop58NOP58 ribonucleoprotein homolog (yeast). (535 aa)
ranGTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (219 aa)
tefmUTP6 small subunit processome component. (929 aa)
Pop7Ribonuclease P protein subunit p20; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences. (139 aa)
imp3IMP U3 small nucleolar ribonucleoprotein 3. (183 aa)
nat10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1037 aa)
LOC101158762Alba domain-containing protein. (187 aa)
rexo2Small fragment nuclease. (308 aa)
mphosph10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (673 aa)
gtpbp4Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (634 aa)
nmd360S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (504 aa)
LOC101156432Zgc:86598; Belongs to the protein kinase superfamily. (392 aa)
LOC101175345Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family. (215 aa)
riok1Serine/threonine-protein kinase RIO1; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (541 aa)
riok2RIO domain-containing protein. (516 aa)
rexo1REX1, RNA exonuclease 1 homolog. (1218 aa)
rpp38Ribonuclease P/MRP 38 subunit. (275 aa)
rbm28RNA binding motif protein 28. (754 aa)
REXO5RNA exonuclease 5. (789 aa)
nol6Nucleolar protein 6. (1137 aa)
rcl1RNA terminal phosphate cyclase-like 1. (372 aa)
emg1EMG1 N1-specific pseudouridine methyltransferase. (245 aa)
H2MDZ5_ORYLARibonuclease P and MRP subunit p25, b. (217 aa)
gnl2Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (736 aa)
pop5Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. (166 aa)
rrp7aRibosomal RNA processing 7 homolog A. (282 aa)
utp4UTP4 small subunit processome component. (685 aa)
wdr75WD repeat domain 75. (834 aa)
gnl3Guanine nucleotide binding protein-like 3 (nucleolar). (591 aa)
fcf1FCF1 rRNA-processing protein. (207 aa)
imp4IMP U3 small nucleolar ribonucleoprotein 4. (291 aa)
H2MR55_ORYLARibonuclease P/MRP 25 subunit-like. (184 aa)
xrn25'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (972 aa)
ak6Adenylate kinase isoenzyme 6; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. May have a role in nuclear energy homeostasis. Has also ATPase activity. May be involved in regulation of Cajal body (CB) formation; Belongs to the adenylate kinase family. AK6 subfamily. (172 aa)
wdr43WD repeat domain 43. (646 aa)
dkc1Dyskeratosis congenita 1, dyskerin. (507 aa)
utp18WD_REPEATS_REGION domain-containing protein. (577 aa)
wdr36WD repeat domain 36. (887 aa)
pop4Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. (221 aa)
EFL1Elongation factor like GTPase 1. (677 aa)
gar1H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (283 aa)
nvlNuclear VCP like. (815 aa)
bms1BMS1 ribosome biogenesis factor. (1247 aa)
nhp2Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (151 aa)
nob1NIN1 (RPN12) binding protein 1 homolog. (498 aa)
nxt2Nuclear transport factor 2-like export factor 2. (143 aa)
droshaDrosha ribonuclease III. (1317 aa)
ENSORLP00000033233Uncharacterized protein. (569 aa)
snu13Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
Heatr1Uncharacterized protein. (156 aa)
sbdsSBDS ribosome maturation factor. (249 aa)
pop1POP1 homolog, ribonuclease P/MRP subunit. (953 aa)
LOC101170539Exportin 1 (CRM1 homolog, yeast) b. (1084 aa)
nop56NOP56 ribonucleoprotein homolog. (582 aa)
tbl3Transducin (beta)-like 3. (929 aa)
xrn15'-3' exoribonuclease 1. (1731 aa)
Wdr3Uncharacterized protein. (80 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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