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ppp2ca ppp2ca upf3b upf3b cstf2 cstf2 papolg papolg rnmt rnmt LOC101169945 LOC101169945 nxf1 nxf1 LOC101169122 LOC101169122 smg6 smg6 LOC101167445 LOC101167445 clp1 clp1 wdr82 wdr82 etf1 etf1 LOC101167679 LOC101167679 ppp2r5b ppp2r5b LOC101171445 LOC101171445 ppp2r2d ppp2r2d CPSF7 CPSF7 WDR33 WDR33 LOC101170959 LOC101170959 LOC101167061 LOC101167061 UPF1 UPF1 nudt21 nudt21 cstf1 cstf1 cstf3 cstf3 PPP2R3B PPP2R3B LOC101167578 LOC101167578 LOC101158483 LOC101158483 ncbp2 ncbp2 LOC101157461 LOC101157461 ppp2r5a ppp2r5a LOC101167467 LOC101167467 ALYREF ALYREF LOC101155811 LOC101155811 pcf11 pcf11 cpsf4 cpsf4 cpsf6 cpsf6 sympk sympk ppp1cc ppp1cc LOC101163319 LOC101163319 smg5 smg5 rbm8a rbm8a hbs1l hbs1l UPF2 UPF2 pabpc4 pabpc4 Pnn Pnn LOC101173107 LOC101173107 cpsf3 cpsf3 Smg1 Smg1 LOC101169753 LOC101169753 PPP2R2C PPP2R2C NCBP1 NCBP1 ppp2cb ppp2cb cpsf1 cpsf1 nxt2 nxt2 LOC101161318 LOC101161318 gspt1 gspt1 LOC101154771 LOC101154771 pabpc1 pabpc1 msi1 msi1 LOC101167611 LOC101167611 PABPN1L PABPN1L pym1 pym1 sap18 sap18 LOC101158109 LOC101158109 LOC101159890 LOC101159890 LOC101173843 LOC101173843 ssu72 ssu72 ppp2r5d ppp2r5d rnps1 rnps1 tardbp tardbp smg7 smg7 pabpn1 pabpn1 acin1 acin1 pelo pelo msi2 msi2 casc3 casc3 ppp2r3a ppp2r3a rngtt rngtt LOC101175535 LOC101175535
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ppp2caSerine/threonine-protein phosphatase. (309 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (457 aa)
cstf2Cleavage stimulation factor, 3' pre-RNA, subunit 2. (514 aa)
papolgPoly(A) polymerase gamma. (834 aa)
rnmtmRNA cap guanine-N7 methyltransferase. (386 aa)
LOC101169945Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (330 aa)
nxf1Zgc:153681. (665 aa)
LOC101169122Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (631 aa)
smg6SMG6 nonsense mediated mRNA decay factor. (1641 aa)
LOC101167445TAR DNA binding protein. (402 aa)
clp1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (441 aa)
wdr82WD repeat domain 82. (600 aa)
etf1Eukaryotic translation termination factor 1b. (443 aa)
LOC101167679Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (453 aa)
ppp2r5bSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (520 aa)
LOC101171445Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (325 aa)
ppp2r2dSerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (447 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (458 aa)
WDR33WD repeat domain 33. (1058 aa)
LOC101170959Apoptotic chromatin condensation inducer 1b. (1146 aa)
LOC101167061Protein phosphatase 2, regulatory subunit A, beta b. (589 aa)
UPF1UPF1 RNA helicase and ATPase. (1101 aa)
nudt21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (229 aa)
cstf1Cleavage stimulation factor, 3' pre-RNA, subunit 1. (431 aa)
cstf3Cleavage stimulation factor, 3' pre-RNA, subunit 3. (714 aa)
PPP2R3BProtein phosphatase 2 regulatory subunit B''beta. (581 aa)
LOC101167578UPF3A regulator of nonsense mediated mRNA decay. (466 aa)
LOC101158483Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (327 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (164 aa)
LOC101157461Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (447 aa)
ppp2r5aSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (509 aa)
LOC101167467Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (445 aa)
ALYREFAly/REF export factor. (268 aa)
LOC101155811Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (327 aa)
pcf11PCF11 cleavage and polyadenylation factor subunit. (1498 aa)
cpsf4Cleavage and polyadenylation specific factor 4. (266 aa)
cpsf6Cleavage and polyadenylation specificity factor subunit 6. (551 aa)
sympkSymplekin. (1212 aa)
ppp1ccSerine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (323 aa)
LOC101163319DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast). (488 aa)
smg5SMG5 nonsense mediated mRNA decay factor. (1118 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
hbs1lHBS1-like translational GTPase. (701 aa)
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1275 aa)
pabpc4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (629 aa)
PnnPinin, desmosome associated protein. (511 aa)
LOC101173107Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (478 aa)
cpsf3Cleavage and polyadenylation specific factor 3. (686 aa)
Smg1SMG1_N domain-containing protein. (764 aa)
LOC101169753Serine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (609 aa)
PPP2R2CSerine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (452 aa)
NCBP1Nuclear cap binding protein subunit 1. (799 aa)
ppp2cbSerine/threonine-protein phosphatase. (309 aa)
cpsf1Cleavage and polyadenylation specific factor 1. (1493 aa)
nxt2Nuclear transport factor 2-like export factor 2. (143 aa)
LOC101161318Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family. (544 aa)
gspt1G1 to S phase transition 1. (619 aa)
LOC101154771Uncharacterized protein. (355 aa)
pabpc1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (635 aa)
msi1Uncharacterized protein. (349 aa)
LOC101167611Mago homolog, exon junction complex subunit. (147 aa)
PABPN1LRRM domain-containing protein. (259 aa)
pym1PYM homolog 1, exon junction complex associated factor. (207 aa)
sap18Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins. (153 aa)
LOC101158109Zgc:193690. (521 aa)
LOC101159890FIP1 like 1b (S. cerevisiae). (567 aa)
LOC101173843WD_REPEATS_REGION domain-containing protein. (315 aa)
ssu72SSU72 homolog, RNA polymerase II CTD phosphatase. (194 aa)
ppp2r5dSerine/threonine protein phosphatase 2A regulatory subunit; Belongs to the phosphatase 2A regulatory subunit. (597 aa)
rnps1RNA binding protein S1, serine-rich domain. (273 aa)
tardbpTAR DNA binding protein, like. (299 aa)
smg7SMG7 nonsense mediated mRNA decay factor. (1141 aa)
pabpn1Poly(A) binding protein, nuclear 1. (292 aa)
acin1SAP domain-containing protein. (1655 aa)
peloProtein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs. (385 aa)
msi2Musashi RNA-binding protein 2a. (389 aa)
casc3Casc3 exon junction complex subunit. (721 aa)
ppp2r3aProtein phosphatase 2, regulatory subunit B'', alpha. (1373 aa)
rngttPolynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (625 aa)
LOC101175535G1 to S phase transition 1, like. (604 aa)
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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