(20 nodes) UBX domain, and VCP-NPL4-UFD1 AAA ATPase complex network (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ubxn11	UBX domain protein 11. (415 aa)
	UBXN4	UBX domain protein 4. (522 aa)
	ube4a	Ubiquitination factor E4A (UFD2 homolog, yeast). (1077 aa)
	LOC110967486	Zgc:136908; Belongs to the AAA ATPase family. (808 aa)
	vcp	Valosin containing protein; Belongs to the AAA ATPase family. (806 aa)
	ubxn1	UBX domain protein 1. (308 aa)
	svip	Si:ch73-147o17.1. (80 aa)
	spata5l1	Spermatogenesis associated 5-like 1. (748 aa)
	ubxn6	UBX domain protein 6. (439 aa)
	faf1	Fas (TNFRSF6) associated factor 1. (513 aa)
	nsfl1c	NSFL1 (p97) cofactor (p47). (374 aa)
	nploc4	NPL4 homolog, ubiquitin recognition factor. (629 aa)
	plaa	Phospholipase A2-activating protein. (798 aa)
	SPATA5	Spermatogenesis associated 5. (901 aa)
	aspscr1	ASPSCR1 tether for SLC2A4, UBX domain containing. (609 aa)
	yod1	YOD1 deubiquitinase. (301 aa)
	ubxn2a	UBX domain protein 2A. (250 aa)
	ubxn7	UBX domain-containing protein 7. (485 aa)
	ufd1	Ubiquitin recognition factor in ER associated degradation 1. (310 aa)
	nvl	Nuclear VCP like. (851 aa)

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC110967486	UBXN4	ENSAPOP00000008038	ENSAPOP00000003846	Zgc:136908; Belongs to the AAA ATPase family.	UBX domain protein 4.	0.995
LOC110967486	aspscr1	ENSAPOP00000008038	ENSAPOP00000026453	Zgc:136908; Belongs to the AAA ATPase family.	ASPSCR1 tether for SLC2A4, UBX domain containing.	0.978
LOC110967486	faf1	ENSAPOP00000008038	ENSAPOP00000017209	Zgc:136908; Belongs to the AAA ATPase family.	Fas (TNFRSF6) associated factor 1.	0.982
LOC110967486	nploc4	ENSAPOP00000008038	ENSAPOP00000018157	Zgc:136908; Belongs to the AAA ATPase family.	NPL4 homolog, ubiquitin recognition factor.	0.980
LOC110967486	nsfl1c	ENSAPOP00000008038	ENSAPOP00000017655	Zgc:136908; Belongs to the AAA ATPase family.	NSFL1 (p97) cofactor (p47).	0.990
LOC110967486	nvl	ENSAPOP00000008038	ENSAPOP00000034845	Zgc:136908; Belongs to the AAA ATPase family.	Nuclear VCP like.	0.652
LOC110967486	plaa	ENSAPOP00000008038	ENSAPOP00000020256	Zgc:136908; Belongs to the AAA ATPase family.	Phospholipase A2-activating protein.	0.932
LOC110967486	svip	ENSAPOP00000008038	ENSAPOP00000010953	Zgc:136908; Belongs to the AAA ATPase family.	Si:ch73-147o17.1.	0.961
LOC110967486	ube4a	ENSAPOP00000008038	ENSAPOP00000005808	Zgc:136908; Belongs to the AAA ATPase family.	Ubiquitination factor E4A (UFD2 homolog, yeast).	0.900
LOC110967486	ubxn1	ENSAPOP00000008038	ENSAPOP00000010878	Zgc:136908; Belongs to the AAA ATPase family.	UBX domain protein 1.	0.993
LOC110967486	ubxn11	ENSAPOP00000008038	ENSAPOP00000000124	Zgc:136908; Belongs to the AAA ATPase family.	UBX domain protein 11.	0.907
LOC110967486	ubxn2a	ENSAPOP00000008038	ENSAPOP00000027861	Zgc:136908; Belongs to the AAA ATPase family.	UBX domain protein 2A.	0.994
LOC110967486	ubxn6	ENSAPOP00000008038	ENSAPOP00000016206	Zgc:136908; Belongs to the AAA ATPase family.	UBX domain protein 6.	0.995
LOC110967486	ubxn7	ENSAPOP00000008038	ENSAPOP00000032978	Zgc:136908; Belongs to the AAA ATPase family.	UBX domain-containing protein 7.	0.999
LOC110967486	ufd1	ENSAPOP00000008038	ENSAPOP00000033034	Zgc:136908; Belongs to the AAA ATPase family.	Ubiquitin recognition factor in ER associated degradation 1.	0.985
LOC110967486	vcp	ENSAPOP00000008038	ENSAPOP00000009316	Zgc:136908; Belongs to the AAA ATPase family.	Valosin containing protein; Belongs to the AAA ATPase family.	0.893
LOC110967486	yod1	ENSAPOP00000008038	ENSAPOP00000027761	Zgc:136908; Belongs to the AAA ATPase family.	YOD1 deubiquitinase.	0.972
SPATA5	UBXN4	ENSAPOP00000022660	ENSAPOP00000003846	Spermatogenesis associated 5.	UBX domain protein 4.	0.966
SPATA5	aspscr1	ENSAPOP00000022660	ENSAPOP00000026453	Spermatogenesis associated 5.	ASPSCR1 tether for SLC2A4, UBX domain containing.	0.966
SPATA5	faf1	ENSAPOP00000022660	ENSAPOP00000017209	Spermatogenesis associated 5.	Fas (TNFRSF6) associated factor 1.	0.958