(14 nodes) Mixed, incl. Alternative mRNA splicing, via spliceosome, and PRP38 family network (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC110948931	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family. (620 aa)
	zmat2	Zinc finger, matrin-type 2. (201 aa)
	pqbp1	Polyglutamine binding protein 1. (231 aa)
	mfap1	Microfibril associated protein 1. (443 aa)
	TCERG1	Transcription elongation regulator 1. (1029 aa)
	prpf38a	Pre-mRNA processing factor 38A. (309 aa)
	ENSAPOP00000011710	Uncharacterized protein. (119 aa)
	DDX5	DEAD-box helicase 5; Belongs to the DEAD box helicase family. (635 aa)
	wbp11	WW domain binding protein 11. (650 aa)
	UBL5	Ubiquitin like 5. (73 aa)
	SMU1	SMU1 DNA replication regulator and spliceosomal factor. (513 aa)
	wbp4	Uncharacterized protein. (442 aa)
	ENSAPOP00000027658	annotation not available (112 aa)
	ik	IK cytokine. (513 aa)

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX5	ENSAPOP00000011710	ENSAPOP00000015247	ENSAPOP00000011710	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.648
DDX5	ENSAPOP00000027658	ENSAPOP00000015247	ENSAPOP00000027658	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	annotation not available	0.764
DDX5	LOC110948931	ENSAPOP00000015247	ENSAPOP00000001437	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	0.894
DDX5	SMU1	ENSAPOP00000015247	ENSAPOP00000025207	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	SMU1 DNA replication regulator and spliceosomal factor.	0.690
DDX5	TCERG1	ENSAPOP00000015247	ENSAPOP00000007636	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Transcription elongation regulator 1.	0.771
DDX5	UBL5	ENSAPOP00000015247	ENSAPOP00000024543	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Ubiquitin like 5.	0.689
DDX5	ik	ENSAPOP00000015247	ENSAPOP00000028562	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	IK cytokine.	0.713
DDX5	mfap1	ENSAPOP00000015247	ENSAPOP00000006749	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Microfibril associated protein 1.	0.774
DDX5	prpf38a	ENSAPOP00000015247	ENSAPOP00000009380	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Pre-mRNA processing factor 38A.	0.699
DDX5	wbp11	ENSAPOP00000015247	ENSAPOP00000018360	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	WW domain binding protein 11.	0.765
DDX5	wbp4	ENSAPOP00000015247	ENSAPOP00000026419	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.682
DDX5	zmat2	ENSAPOP00000015247	ENSAPOP00000003327	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	Zinc finger, matrin-type 2.	0.662
ENSAPOP00000011710	DDX5	ENSAPOP00000011710	ENSAPOP00000015247	Uncharacterized protein.	DEAD-box helicase 5; Belongs to the DEAD box helicase family.	0.648
ENSAPOP00000011710	ENSAPOP00000027658	ENSAPOP00000011710	ENSAPOP00000027658	Uncharacterized protein.	annotation not available	0.756
ENSAPOP00000011710	LOC110948931	ENSAPOP00000011710	ENSAPOP00000001437	Uncharacterized protein.	DEAD (Asp-Glu-Ala-Asp) box helicase 5; Belongs to the DEAD box helicase family.	0.648
ENSAPOP00000011710	TCERG1	ENSAPOP00000011710	ENSAPOP00000007636	Uncharacterized protein.	Transcription elongation regulator 1.	0.936
ENSAPOP00000011710	UBL5	ENSAPOP00000011710	ENSAPOP00000024543	Uncharacterized protein.	Ubiquitin like 5.	0.888
ENSAPOP00000011710	ik	ENSAPOP00000011710	ENSAPOP00000028562	Uncharacterized protein.	IK cytokine.	0.709
ENSAPOP00000011710	mfap1	ENSAPOP00000011710	ENSAPOP00000006749	Uncharacterized protein.	Microfibril associated protein 1.	0.889
ENSAPOP00000011710	prpf38a	ENSAPOP00000011710	ENSAPOP00000009380	Uncharacterized protein.	Pre-mRNA processing factor 38A.	0.925