(7 nodes) Precatalytic spliceosome network (Acanthochromis polyacanthus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gpkow	G patch domain and KOW motifs. (509 aa)
	cwc27	CWC27 spliceosome associated cyclophilin. (480 aa)
	bud13	BUD13 homolog. (529 aa)
	rnf113a	Ring finger protein 113A. (322 aa)
	ENSAPOP00000027245	annotation not available (85 aa)
	rbmx2	RNA binding motif protein X-linked 2. (273 aa)
	SNIP1	Smad nuclear interacting protein 1. (361 aa)

Your Current Organism:

Acanthochromis polyacanthus

NCBI taxonomy Id: 80966
Other names: A. polyacanthus, Acanthochromis polyacathus, spiny chromis, spiny damselfish

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSAPOP00000027245	SNIP1	ENSAPOP00000027245	ENSAPOP00000034901	annotation not available	Smad nuclear interacting protein 1.	0.924
ENSAPOP00000027245	bud13	ENSAPOP00000027245	ENSAPOP00000010900	annotation not available	BUD13 homolog.	0.948
ENSAPOP00000027245	cwc27	ENSAPOP00000027245	ENSAPOP00000004026	annotation not available	CWC27 spliceosome associated cyclophilin.	0.965
ENSAPOP00000027245	gpkow	ENSAPOP00000027245	ENSAPOP00000003471	annotation not available	G patch domain and KOW motifs.	0.977
ENSAPOP00000027245	rbmx2	ENSAPOP00000027245	ENSAPOP00000031371	annotation not available	RNA binding motif protein X-linked 2.	0.927
ENSAPOP00000027245	rnf113a	ENSAPOP00000027245	ENSAPOP00000014619	annotation not available	Ring finger protein 113A.	0.972
SNIP1	ENSAPOP00000027245	ENSAPOP00000034901	ENSAPOP00000027245	Smad nuclear interacting protein 1.	annotation not available	0.924
SNIP1	bud13	ENSAPOP00000034901	ENSAPOP00000010900	Smad nuclear interacting protein 1.	BUD13 homolog.	0.996
SNIP1	cwc27	ENSAPOP00000034901	ENSAPOP00000004026	Smad nuclear interacting protein 1.	CWC27 spliceosome associated cyclophilin.	0.965
SNIP1	gpkow	ENSAPOP00000034901	ENSAPOP00000003471	Smad nuclear interacting protein 1.	G patch domain and KOW motifs.	0.839
SNIP1	rbmx2	ENSAPOP00000034901	ENSAPOP00000031371	Smad nuclear interacting protein 1.	RNA binding motif protein X-linked 2.	0.998
SNIP1	rnf113a	ENSAPOP00000034901	ENSAPOP00000014619	Smad nuclear interacting protein 1.	Ring finger protein 113A.	0.961
bud13	ENSAPOP00000027245	ENSAPOP00000010900	ENSAPOP00000027245	BUD13 homolog.	annotation not available	0.948
bud13	SNIP1	ENSAPOP00000010900	ENSAPOP00000034901	BUD13 homolog.	Smad nuclear interacting protein 1.	0.996
bud13	cwc27	ENSAPOP00000010900	ENSAPOP00000004026	BUD13 homolog.	CWC27 spliceosome associated cyclophilin.	0.973
bud13	gpkow	ENSAPOP00000010900	ENSAPOP00000003471	BUD13 homolog.	G patch domain and KOW motifs.	0.972
bud13	rbmx2	ENSAPOP00000010900	ENSAPOP00000031371	BUD13 homolog.	RNA binding motif protein X-linked 2.	0.999
bud13	rnf113a	ENSAPOP00000010900	ENSAPOP00000014619	BUD13 homolog.	Ring finger protein 113A.	0.968
cwc27	ENSAPOP00000027245	ENSAPOP00000004026	ENSAPOP00000027245	CWC27 spliceosome associated cyclophilin.	annotation not available	0.965
cwc27	SNIP1	ENSAPOP00000004026	ENSAPOP00000034901	CWC27 spliceosome associated cyclophilin.	Smad nuclear interacting protein 1.	0.965